RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 BRICD5Q6PL45 260 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 ZNF826PQ6ZT77 177 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 ZNF573Q86YE8 665 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 CENPSQ8N2Z9 138 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 ARHGAP5-AS1Q96IT6 56 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 Q96M66 194 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 C11orf54Q9H0W9 315 aaPredicted RBP17.08■□□□□ 0.33
CLN3-250ENST00000636839 ESRP2Q9H6T0 727 aaKnown RBP17.08■□□□□ 0.33
CLN3-250ENST00000636839 HCFC1P51610 2035 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 GEMIN2O14893 280 aaKnown RBP17.08■□□□□ 0.32
CLN3-250ENST00000636839 GSTZ1O43708 216 aaPredicted RBP17.08■□□□□ 0.32
CLN3-250ENST00000636839 CLDN14O95500 239 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 OR4A8P0C604 315 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 SIGIRRQ6IA17 410 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 GDPD3Q7L5L3 318 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 CDH24Q86UP0 819 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 C11orf53Q8IXP5 236 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 C19orf18Q8NEA5 215 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 OR13G1Q8NGZ3 307 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 FCAMRQ8WWV6 532 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 AQP3Q92482 292 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 MRPL24Q96A35 216 aaKnown RBP17.08■□□□□ 0.32
CLN3-250ENST00000636839 NGBQ9NPG2 151 aa17.08■□□□□ 0.32
CLN3-250ENST00000636839 COL12A1Q99715 3063 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 ISPDA4D126 451 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 FOXI3A8MTJ6 420 aaPredicted RBP17.07■□□□□ 0.32
CLN3-250ENST00000636839 GABARAPH6UMI1 98 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 BLVRBP30043 206 aaPredicted RBP17.07■□□□□ 0.32
CLN3-250ENST00000636839 GDNFP39905 211 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 RFX2P48378 723 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 SORDQ00796 357 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 Q6ZTK2 550 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 SSX8Q7RTT4 187 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 OSR2Q8N2R0 312 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 ZSCAN4Q8NAM6 433 aaPredicted RBP17.07■□□□□ 0.32
CLN3-250ENST00000636839 URM1Q9BTM9 101 aaKnown RBP17.07■□□□□ 0.32
CLN3-250ENST00000636839 TM2D1Q9BX74 207 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 UFSP2Q9NUQ7 469 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 IL36GQ9NZH8 169 aa17.07■□□□□ 0.32
CLN3-250ENST00000636839 FLNCQ14315 2725 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 E7EQL1 145 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 C19orf84I3L1E1 186 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 SPRY3O43610 288 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 DUSP1P28562 367 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 RPS23P62266 143 aaKnown RBP17.06■□□□□ 0.32
CLN3-250ENST00000636839 CHPT1Q8WUD6 406 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 RAB3CQ96E17 227 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 SEH1LQ96EE3 360 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 LRRC46Q96FV0 321 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 ST3GAL6Q9Y274 331 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 LRP5LA4QPB2 252 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 RNF224P0DH78 156 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 PRSS3P35030 304 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 OXA1LQ15070 435 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 RAB12Q6IQ22 244 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 DNM1P46Q6ZS02 220 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 C6orf201Q7Z4U5 140 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 GLCCI1Q86VQ1 547 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 ZCCHC24Q8N2G6 241 aaKnown RBP17.06■□□□□ 0.32
CLN3-250ENST00000636839 NUDCD2Q8WVJ2 157 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 NEDD4LQ96PU5 975 aa17.06■□□□□ 0.32
CLN3-250ENST00000636839 A0A0A6YYH2 397 aa17.05■□□□□ 0.32
CLN3-250ENST00000636839 A0A1B0GWJ7 208 aa17.05■□□□□ 0.32
CLN3-250ENST00000636839 A6NJ64 397 aa17.05■□□□□ 0.32
CLN3-250ENST00000636839 DEFB108AA8MXU0 73 aa17.05■□□□□ 0.32
CLN3-250ENST00000636839 ZNF780AO75290 641 aaPredicted RBP17.05■□□□□ 0.32
CLN3-250ENST00000636839 CHRM2P08172 466 aa17.05■□□□□ 0.32
CLN3-250ENST00000636839 MPZP25189 248 aa17.05■□□□□ 0.32
CLN3-250ENST00000636839 INPP1P49441 399 aa17.05■□□□□ 0.32
CLN3-250ENST00000636839 NRARPQ7Z6K4 114 aa17.05■□□□□ 0.32
CLN3-250ENST00000636839 OR56B1Q8NGI3 324 aa17.05■□□□□ 0.32
CLN3-250ENST00000636839 CXXC4Q9H2H0 198 aa17.05■□□□□ 0.32
CLN3-250ENST00000636839 RBMX2Q9Y388 322 aaKnown RBP17.05■□□□□ 0.32
CLN3-250ENST00000636839 TRAPPC2LH3BP13 241 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 J3QT63 122 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 AKR7A2O43488 359 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 CD3EP07766 207 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 IL24Q13007 206 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 ASAH1Q13510 395 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 GPR176Q14439 515 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 NKAPLQ5M9Q1 402 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 TMEM200AQ86VY9 491 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 MKXQ8IYA7 352 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 SAXO1Q8IYX7 474 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 LILRB1Q8NHL6 650 aaPredicted RBP17.04■□□□□ 0.32
CLN3-250ENST00000636839 PKDREJQ9NTG1 2253 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 hCG_2014768A0A024R1R8 64 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 PLSCR5A0PG75 271 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 HIST1H1DP16402 221 aaKnown RBP17.04■□□□□ 0.32
CLN3-250ENST00000636839 CPT2P23786 658 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 RBM11P57052 281 aaKnown RBP17.04■□□□□ 0.32
CLN3-250ENST00000636839 NKPD1Q17RQ9 610 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 TRIM16LQ309B1 348 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 SFRP4Q6FHJ7 346 aaPredicted RBP17.04■□□□□ 0.32
CLN3-250ENST00000636839 ZNF808Q8N4W9 903 aaPredicted RBP17.04■□□□□ 0.32
CLN3-250ENST00000636839 GPX8Q8TED1 209 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 PIK3IP1Q96FE7 263 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 ELMOD3Q96FG2 381 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 PKIBQ9C010 78 aa17.04■□□□□ 0.32
CLN3-250ENST00000636839 PLK3Q9H4B4 646 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms