RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 MOB4Q9Y3A3 225 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 HSPE1-MOB4S4R3N1 261 aa11.39□□□□□ -0.59
CLN3-249ENST00000636685 TNCP24821 2201 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 TRBV4-1A0A0J9YWV2 114 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 K7N7A8 449 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 ZNF593O00488 134 aaPredicted RBP11.38□□□□□ -0.59
CLN3-249ENST00000636685 DNAJC8O75937 253 aaPredicted RBP11.38□□□□□ -0.59
CLN3-249ENST00000636685 ZNF682O95780 498 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 SLC15A1P46059 708 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 IFI44LQ53G44 452 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 FAM27D1Q5T7N8 215 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 BAIAP2L2Q6UXY1 529 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 ZNF511Q8NB15 262 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 C7orf26Q96N11 449 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 RGCCQ9H4X1 137 aa11.38□□□□□ -0.59
CLN3-249ENST00000636685 A0A1W2PRQ8 180 aa11.37□□□□□ -0.59
CLN3-249ENST00000636685 FAM220BPB1ANY3 271 aa11.37□□□□□ -0.59
CLN3-249ENST00000636685 MMP23AO75900 390 aa11.37□□□□□ -0.59
CLN3-249ENST00000636685 H1F0P07305 194 aaKnown RBP11.37□□□□□ -0.59
CLN3-249ENST00000636685 SPNP16150 400 aa11.37□□□□□ -0.59
CLN3-249ENST00000636685 DGCR6Q14129 220 aa11.37□□□□□ -0.59
CLN3-249ENST00000636685 KRT72Q14CN4 511 aa11.37□□□□□ -0.59
CLN3-249ENST00000636685 CYP4Z1Q86W10 505 aa11.37□□□□□ -0.59
CLN3-249ENST00000636685 ASCC1Q8N9N2 400 aaKnown RBP11.37□□□□□ -0.59
CLN3-249ENST00000636685 TSPEARQ8WU66 669 aa11.37□□□□□ -0.59
CLN3-249ENST00000636685 GMPR2Q9P2T1 348 aaKnown RBP11.37□□□□□ -0.59
CLN3-249ENST00000636685 PRR23D1E9PI22 279 aaPredicted RBP11.36□□□□□ -0.59
CLN3-249ENST00000636685 PRR23D2P0DMB1 279 aaPredicted RBP11.36□□□□□ -0.59
CLN3-249ENST00000636685 INSL3P51460 131 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 ARHGDIBP52566 201 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 FHL3Q13643 280 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 CEACAM21Q3KPI0 293 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 TEX38Q6PEX7 206 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 ZBTB49Q6ZSB9 765 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 FKBP9P1Q75LS8 142 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 TRPM8Q7Z2W7 1104 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 STPG2Q8N412 459 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 OR2T12Q8NG77 320 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 OR2T4Q8NH00 348 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 HSH2DQ96JZ2 352 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 FGFR1OP2Q9NVK5 253 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 ENPP4Q9Y6X5 453 aa11.36□□□□□ -0.59
CLN3-249ENST00000636685 LINC01548A6NM66 108 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 LEUTXA8MZ59 168 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 ANKRD65E5RJM6 399 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 IDH3BO43837 385 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 NXPH2O95156 264 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 APOC1P02654 83 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 GYPBP06028 91 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 GP9P14770 177 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 FMO3P31513 532 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 CDX1P47902 265 aaPredicted RBP11.35□□□□□ -0.59
CLN3-249ENST00000636685 BDH1Q02338 343 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 EDDM3AQ14507 147 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 TEX30Q5JUR7 227 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 GDPD3Q7L5L3 318 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 SLC35E3Q7Z769 313 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 ABHD12Q8N2K0 398 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 DRAM1Q8N682 238 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 TPRX1Q8N7U7 411 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 C5orf56Q8N8D9 126 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 OR52J3Q8NH60 311 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 AMELYQ99218 206 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 NRIP2Q9BQI9 281 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 KRCC1Q9NPI7 259 aaPredicted RBP11.35□□□□□ -0.59
CLN3-249ENST00000636685 SLC22A13Q9Y226 551 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 SIRT4Q9Y6E7 314 aaPredicted RBP11.35□□□□□ -0.59
CLN3-249ENST00000636685 ABCA13Q86UQ4 5058 aa11.35□□□□□ -0.59
CLN3-249ENST00000636685 FAM172BPA6NC97 362 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 CCRL2O00421 344 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 EDF1O60869 148 aaKnown RBP11.34□□□□□ -0.59
CLN3-249ENST00000636685 ZNF737O75373 536 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 ATP5HO75947 161 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 MEF2CQ06413 473 aaPredicted RBP11.34□□□□□ -0.59
CLN3-249ENST00000636685 SRSF7Q16629 238 aaKnown RBP eCLIP11.34□□□□□ -0.59
CLN3-249ENST00000636685 MOB3CQ70IA8 216 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 CBLL1Q75N03 491 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 OR5A2Q8NGI9 324 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 RNF133Q8WVZ7 376 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 ABHD6Q9BV23 337 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 ISYNA1Q9NPH2 558 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 CD300AQ9UGN4 299 aa11.34□□□□□ -0.59
CLN3-249ENST00000636685 hADV38S2A0JD32 116 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 ARRDC5A6NEK1 342 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 OR5B21A6NL26 309 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 DIRAS1O95057 198 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 IGHG2P01859 326 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 OPRL1P41146 370 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 PNLIPRP3Q17RR3 467 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 CXorf66Q5JRM2 361 aaPredicted RBP11.33□□□□□ -0.6
CLN3-249ENST00000636685 TPTE2P1Q5T6R2 138 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 PRAMEF5Q5TYX0 476 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 ZNF429Q86V71 674 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 FOXRED2Q8IWF2 684 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 FAM86B1Q8N7N1 296 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 OR11H1Q8NG94 326 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 FAM81AQ8TBF8 368 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 LINC00476Q8WZB0 136 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 SPATA25Q9BR10 227 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 FUZQ9BT04 418 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms