RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 ACAA1P09110 424 aaPredicted RBP12.07□□□□□ -0.48
VRK3-206ENST00000594090 ATP1B3P54709 279 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 IL13RA1P78552 427 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 IKZF1Q13422 519 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 C11orf91Q3C1V1 193 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 SERPINA12Q8IW75 414 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 BATF2Q8N1L9 274 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 PARP16Q8N5Y8 322 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 OPALINQ96PE5 141 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 METRNQ9UJH8 293 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 ZNF222Q9UK12 451 aa12.07□□□□□ -0.48
VRK3-206ENST00000594090 SIGLEC5O15389 551 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 ECDO95905 644 aaPredicted RBP12.06□□□□□ -0.48
VRK3-206ENST00000594090 MT-ND2P03891 347 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 CDK1P06493 297 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 OCM2P0CE71 109 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 OCMP0CE72 109 aaPredicted RBP12.06□□□□□ -0.48
VRK3-206ENST00000594090 PPIAL4GP0DN37 164 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 EPHA1P21709 976 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 GABRA2P47869 451 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 SOX2P48431 317 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 MTCP1P56278 107 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 WNT4P56705 351 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 TAS2R43P59537 309 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 ERVK11-1P61568 191 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 SCGB2A2Q13296 93 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 DGUOKQ16854 277 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 LRRC10Q5BKY1 277 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 ARMCX4Q5H9R4 360 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 DMKNQ6E0U4 476 aaPredicted RBP12.06□□□□□ -0.48
VRK3-206ENST00000594090 SLC25A26Q70HW3 274 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 BTN2A1Q7KYR7 527 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 ZFP41Q8N8Y5 198 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 OR5D14Q8NGL3 314 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 GPR148Q8TDV2 347 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 SLAMF9Q96A28 289 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 MED30Q96HR3 178 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 ZCCHC4Q9H5U6 513 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 SCN3BQ9NY72 215 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 MTCH1Q9NZJ7 389 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 ZNF281Q9Y2X9 895 aa12.06□□□□□ -0.48
VRK3-206ENST00000594090 WNK2Q9Y3S1 2297 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 RFPL4AA6NLU0 287 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 PTGES3LE9PB15 166 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 RFPL4AL1F8VTS6 287 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 GPR37O15354 613 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 ALX3O95076 343 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 VHLP40337 213 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 POU3F4P49335 361 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 SLC35A2P78381 396 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 DOC2BQ14184 412 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 KLF17Q5JT82 389 aaPredicted RBP12.05□□□□□ -0.48
VRK3-206ENST00000594090 NANOGP1Q8N7R0 232 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 PNLDC1Q8NA58 520 aaKnown RBP12.05□□□□□ -0.48
VRK3-206ENST00000594090 SGCDQ92629 289 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 RFT1Q96AA3 541 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 UPRTQ96BW1 309 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 SDSLQ96GA7 329 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 PGLYRP3Q96LB9 341 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 CEP19Q96LK0 163 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 SPACA5Q96QH8 159 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 PAK1IP1Q9NWT1 392 aaPredicted RBP12.05□□□□□ -0.48
VRK3-206ENST00000594090 SLC25A10Q9UBX3 287 aaPredicted RBP12.05□□□□□ -0.48
VRK3-206ENST00000594090 RPUSD1Q9UJJ7 312 aaKnown RBP12.05□□□□□ -0.48
VRK3-206ENST00000594090 MAB21L2Q9Y586 359 aa12.05□□□□□ -0.48
VRK3-206ENST00000594090 F8VVB4 439 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 F8VWA3 439 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 SULT1B1O43704 296 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 KNG1P01042 644 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 LIPFP07098 398 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 CAV3P56539 151 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 FGF12P61328 243 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 RNLSQ5VYX0 342 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 CRIP3Q6Q6R5 217 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 RNF144BQ7Z419 303 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 CD177Q8N6Q3 437 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 ZNRF1Q8ND25 227 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 OR13C5Q8NGS8 318 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 GHSRQ92847 366 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 MYDGFQ969H8 173 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 TMEM106AQ96A25 262 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 CNBD2Q96M20 576 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 MND1Q9BWT6 205 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 NEK6Q9HC98 313 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 RAB26Q9ULW5 256 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 ERGIC3Q9Y282 383 aa12.04□□□□□ -0.48
VRK3-206ENST00000594090 RRP15Q9Y3B9 282 aaKnown RBP12.04□□□□□ -0.48
VRK3-206ENST00000594090 TRAV40A0A0B4J280 105 aa12.03□□□□□ -0.48
VRK3-206ENST00000594090 TRBV5-5A0A0J9YX44 114 aa12.03□□□□□ -0.48
VRK3-206ENST00000594090 PNMA8CA0A1B0GUJ8 204 aa12.03□□□□□ -0.48
VRK3-206ENST00000594090 ZNF879B4DU55 563 aa12.03□□□□□ -0.48
VRK3-206ENST00000594090 SPRY1O43609 319 aaPredicted RBP12.03□□□□□ -0.48
VRK3-206ENST00000594090 INMTO95050 263 aa12.03□□□□□ -0.48
VRK3-206ENST00000594090 CYB5AP00167 134 aa12.03□□□□□ -0.48
VRK3-206ENST00000594090 CD2P06729 351 aa12.03□□□□□ -0.48
VRK3-206ENST00000594090 HCKP08631 526 aa12.03□□□□□ -0.48
VRK3-206ENST00000594090 PRDX2P32119 198 aa12.03□□□□□ -0.48
VRK3-206ENST00000594090 CEBPDP49716 269 aaPredicted RBP12.03□□□□□ -0.48
VRK3-206ENST00000594090 PDZK1IP1Q13113 114 aa12.03□□□□□ -0.48
VRK3-206ENST00000594090 YIF1BQ5BJH7 314 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms