RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 SLC22A6Q4U2R8 563 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 C1QL2Q7Z5L3 287 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 WDR86Q86TI4 376 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 DTX2Q86UW9 622 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 GDPD1Q8N9F7 314 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 SCCPDHQ8NBX0 429 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 OR10AD1Q8NGE0 317 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 OR51T1Q8NGJ9 327 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 Q8TCH9 128 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 MEGF10Q96KG7 1140 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 SEBOXQ9HB31 216 aaPredicted RBP12.96□□□□□ -0.33
SS18-215ENST00000580642 ELL3Q9HB65 397 aaPredicted RBP12.96□□□□□ -0.33
SS18-215ENST00000580642 PALMDQ9NP74 551 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 CBLN4Q9NTU7 201 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 RASL12Q9NYN1 266 aa12.96□□□□□ -0.33
SS18-215ENST00000580642 ADGRG4Q8IZF6 3080 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 H0YL77 283 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 SPRY3O43610 288 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 CRTAPO75718 401 aaPredicted RBP12.95□□□□□ -0.34
SS18-215ENST00000580642 PLAUP00749 431 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 RNF224P0DH78 156 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 PGA5P0DJD9 388 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 MGMTP16455 207 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 ERVK11-1P61568 191 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 TNFAIP6P98066 277 aaPredicted RBP12.95□□□□□ -0.34
SS18-215ENST00000580642 TLE4Q04727 773 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 ZNF181Q2M3W8 571 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 DMRTC1Q5HYR2 192 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 RNF144BQ7Z419 303 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 FAM90A1Q86YD7 464 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 OSR2Q8N2R0 312 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 POC1AQ8NBT0 407 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 HPS1Q92902 700 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 OR2V2Q96R30 315 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 NRIP2Q9BQI9 281 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 CCDC32Q9BV29 185 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 LPAR5Q9H1C0 372 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 ATG5Q9H1Y0 275 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 DYNLRB1Q9NP97 96 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 PLEKHA6Q9Y2H5 1048 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 V9GYH0 126 aa12.95□□□□□ -0.34
SS18-215ENST00000580642 PLCE1Q9P212 2302 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 IGKV1-12A0A0C4DH73 117 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 SPRY1O43609 319 aaPredicted RBP12.94□□□□□ -0.34
SS18-215ENST00000580642 ANGPTL7O43827 346 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 MPIG6BO95866 241 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 IGKV1D-12P01611 117 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 GRPP07492 148 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 IL13RA2Q14627 380 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 MPV17LQ2QL34 196 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 TMEM69Q5SWH9 247 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 FIP1L1Q6UN15 594 aaKnown RBP12.94□□□□□ -0.34
SS18-215ENST00000580642 FAM131AQ6UXB0 335 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 C11orf53Q8IXP5 236 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 TMEM104Q8NE00 496 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 OR4M1Q8NGD0 313 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 ZFAND2BQ8WV99 257 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 NEUROG1Q92886 237 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 DVL3Q92997 716 aaPredicted RBP12.94□□□□□ -0.34
SS18-215ENST00000580642 BORCS5Q969J3 196 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 Q96M66 194 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 GAL3ST1Q99999 423 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 SPACA1Q9HBV2 294 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.94□□□□□ -0.34
SS18-215ENST00000580642 MTCH1Q9NZJ7 389 aa12.94□□□□□ -0.34
SS18-215ENST00000580642 RAB27BO00194 218 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 CDIPTO14735 213 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 SYNGR1O43759 233 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 CA11O75493 328 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 HTR3BO95264 441 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 GLAP06280 429 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 SFTPBP07988 381 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 SERPINA2P20848 420 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 PMELP40967 661 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 EFNB2P52799 333 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 SPIN3Q5JUX0 258 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 HACD4Q5VWC8 232 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 WDR82Q6UXN9 313 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 C20orf204Q6ZNR8 217 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 OR11L1Q8NGX0 322 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 SELENOIQ9C0D9 397 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 IFT22Q9H7X7 185 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 HES4Q9HCC6 221 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 HSF4Q9ULV5 492 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 NPTNQ9Y639 398 aa12.93□□□□□ -0.34
SS18-215ENST00000580642 A6NLC8 198 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 LRRC30A6NM36 301 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 SULT1C2O00338 296 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 PLATP00750 562 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 MELTFP08582 738 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 GSTP1P09211 210 aaKnown RBP12.92□□□□□ -0.34
SS18-215ENST00000580642 DANCRP0C864 163 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 COX6B1P14854 86 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 CDK2P24941 298 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 RBM11P57052 281 aaKnown RBP12.92□□□□□ -0.34
SS18-215ENST00000580642 MRPS11P82912 194 aaKnown RBP12.92□□□□□ -0.34
SS18-215ENST00000580642 IL18Q14116 193 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 OR10K2Q6IF99 312 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 C11orf71Q6IPW1 123 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 FAM58AQ8N1B3 248 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms