RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 C2orf73Q8N5S3 287 aaPredicted RBP3.38□□□□□ -1.87
NUP88-213ENST00000576862 NPWQ8N729 165 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 LINC01555Q8NAE3 123 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 CCDC54Q8NEL0 328 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 LFNGQ8NES3 379 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 OR51D1Q8NGF3 324 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 OR52I1Q8NGK6 324 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 DYNC2LI1Q8TCX1 351 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 APH1BQ8WW43 257 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 RPEQ96AT9 228 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 TLCD1Q96CP7 247 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 SGTBQ96EQ0 304 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 CNN2Q99439 309 aaKnown RBP3.38□□□□□ -1.87
NUP88-213ENST00000576862 STACQ99469 402 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 SDHCQ99643 169 aaPredicted RBP3.38□□□□□ -1.87
NUP88-213ENST00000576862 TMEM109Q9BVC6 243 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 BCL2L14Q9BZR8 327 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 UCK2Q9BZX2 261 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 METTL9Q9H1A3 318 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 CDC42EP4Q9H3Q1 356 aaKnown RBP3.38□□□□□ -1.87
NUP88-213ENST00000576862 TPK1Q9H3S4 243 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 RHOJQ9H4E5 214 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 C11orf49Q9H6J7 331 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 PLEKHA1Q9HB21 404 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 TMBIM4Q9HC24 238 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 SLC17A5Q9NRA2 495 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 CTPS2Q9NRF8 586 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 SLC2A9Q9NRM0 540 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 SPANXB1Q9NS25 103 aaPredicted RBP3.38□□□□□ -1.87
NUP88-213ENST00000576862 HEY1Q9Y5J3 304 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 CLUHO75153 1309 aa3.38□□□□□ -1.87
NUP88-213ENST00000576862 DOCK3Q8IZD9 2030 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 LOC100131303A0A0U1RQF7 123 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 A0A1B0GVI7 797 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 FAM92AA1XBS5 289 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 FAM74A7A6NL05 159 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 VSTM2BA6NLU5 285 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 HIDE1A8MVS5 230 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 ZNF705EA8MWA4 302 aaPredicted RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 M0QZK8 103 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 PPP1R2P9O14990 202 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 MAGEB4O15481 346 aaPredicted RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 UGT1A9O60656 530 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 SRP72O76094 671 aaKnown RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 DIRAS1O95057 198 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 TTC4O95801 387 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 ORM1P02763 201 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 TCRBP04435 133 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 CDK1P06493 297 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 HIST1H1CP16403 213 aaKnown RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 ZNF17P17021 662 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 CRABP1P29762 137 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 ARR3P36575 388 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 HCAR3P49019 387 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 PRKXP51817 358 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 KPNA2P52292 529 aaKnown RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 TMEM33P57088 247 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 TPI1P60174 286 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 AP1S1P61966 158 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 DEFB103AP81534 67 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 MRPS22P82650 360 aaKnown RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 SRSF6Q13247 344 aaKnown RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 PAFAH1B3Q15102 231 aaKnown RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 RPEL1Q2QD12 228 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 FAM74A3Q4VXF1 159 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 PDZD11Q5EBL8 140 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 TNFAIP8L3Q5GJ75 292 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 OGFRL1Q5TC84 451 aaPredicted RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 HACD4Q5VWC8 232 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 Q6ZSR3 168 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 LINC00336Q6ZUF6 198 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 TMED4Q7Z7H5 227 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 SKA3Q8IX90 412 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 MKXQ8IYA7 352 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 PUSL1Q8N0Z8 303 aaKnown RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 MTURNQ8N3F0 131 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 RNF175Q8N4F7 328 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 NOXO1Q8NFA2 376 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 PIGXQ8TBF5 258 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 C7orf33Q8WU49 177 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 TFGQ92734 400 aaPredicted RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 PPWD1Q96BP3 646 aaKnown RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 ITCHQ96J02 903 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 BEX2Q9BXY8 128 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 MRPS26Q9BYN8 205 aaKnown RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 CHIAQ9BZP6 476 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 FAM107BQ9H098 131 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 CWH43Q9H720 699 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 GID8Q9NWU2 228 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 IL36GQ9NZH8 169 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 FBXL3Q9UKT7 428 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 SCML2Q9UQR0 700 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 USH1CQ9Y6N9 552 aa3.37□□□□□ -1.87
NUP88-213ENST00000576862 MYH9P35579 1960 aaKnown RBP3.37□□□□□ -1.87
NUP88-213ENST00000576862 ZNFX1Q9P2E3 1918 aaKnown RBP3.36□□□□□ -1.87
NUP88-213ENST00000576862 MYH11P35749 1972 aa3.36□□□□□ -1.87
NUP88-213ENST00000576862 NSG1A0A0A6YYJ2 146 aa3.36□□□□□ -1.87
NUP88-213ENST00000576862 HACD1B0YJ81 288 aa3.36□□□□□ -1.87
NUP88-213ENST00000576862 H0Y980 276 aa3.36□□□□□ -1.87
NUP88-213ENST00000576862 KCNK1O00180 336 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms