RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 SLAMF9Q96A28 289 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 GPER1Q99527 375 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 CHCHD6Q9BRQ6 235 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 REG4Q9BYZ8 158 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 SLITRK2Q9H156 845 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 WDR13Q9H1Z4 485 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 RNF167Q9H6Y7 350 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 TMEM165Q9HC07 324 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 MTCH1Q9NZJ7 389 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 POLDIP2Q9Y2S7 368 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 AK6Q9Y3D8 172 aaKnown RBP7.18□□□□□ -1.26
NUP88-211ENST00000575976 ARID1AO14497 2285 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 TANC2Q9HCD6 1990 aa7.18□□□□□ -1.26
NUP88-211ENST00000575976 TRAV38-1A0A0B4J264 116 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 LOC100506127A0A0U1RQW1 187 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 OOEPA6NGQ2 149 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 F8VVB4 439 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 F8VWA3 439 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 FSTL3O95633 263 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 CYB5AP00167 134 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 ACAA1P09110 424 aaPredicted RBP7.17□□□□□ -1.26
NUP88-211ENST00000575976 CALCBP10092 127 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 BCL3P20749 454 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 USF1P22415 310 aaPredicted RBP7.17□□□□□ -1.26
NUP88-211ENST00000575976 MYL9P24844 172 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 MDH2P40926 338 aaKnown RBP7.17□□□□□ -1.26
NUP88-211ENST00000575976 PTGFRP43088 359 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 NPBWR2P48146 333 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 ERVK11-1P61568 191 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 ZNF404Q494X3 552 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 TEX36Q5VZQ5 186 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 LYPD2Q6UXB3 125 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 ACP7Q6ZNF0 438 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 CDH26Q8IXH8 852 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 JAGN1Q8N5M9 183 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 NKAIN3Q8N8D7 197 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 ZSCAN4Q8NAM6 433 aaPredicted RBP7.17□□□□□ -1.26
NUP88-211ENST00000575976 MAPK1IP1LQ8NDC0 245 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 OR5T2Q8NGG2 359 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 OR51F2Q8NH61 342 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 CLDND2Q8NHS1 167 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 TNFAIP8L1Q8WVP5 186 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 CPNE2Q96FN4 548 aaPredicted RBP7.17□□□□□ -1.26
NUP88-211ENST00000575976 CEP19Q96LK0 163 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 GFI1Q99684 422 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 GAL3ST1Q99999 423 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 NRIP2Q9BQI9 281 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 TMEM246Q9BRR3 403 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 CENPOQ9BU64 300 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 FUNDC2Q9BWH2 189 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 FAM192AQ9GZU8 254 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 CNTD2Q9H8S5 307 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 SNTG1Q9NSN8 517 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 ING4Q9UNL4 249 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 GSTK1Q9Y2Q3 226 aa7.17□□□□□ -1.26
NUP88-211ENST00000575976 TRAV1-2A0A0B4J238 106 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 CEACAM18A8MTB9 384 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 TRAPPC2LH3BP13 241 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 H7C1Q1 480 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 TNFRSF13BO14836 293 aaPredicted RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 AIREO43918 545 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 KDM4BO94953 1096 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 NXPH2O95156 264 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 CDRT1O95170 752 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 GYPAP02724 150 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 SFTPBP07988 381 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 CD37P11049 281 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 FOSL1P15407 271 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 MUC1P15941 1255 aaPredicted RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 AMY2BP19961 511 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 IL2RGP31785 369 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 TGFBR1P36897 503 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 RPL5P46777 297 aaKnown RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 OR10A3P58181 314 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 LMO4P61968 165 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 LSM3P62310 102 aaKnown RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 LOXL1Q08397 574 aaPredicted RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 MICBQ29980 383 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 TIMM50Q3ZCQ8 353 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 TMEM155Q4W5P6 130 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 C1orf100Q5SVJ3 147 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 GPR107Q5VW38 600 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 GLT8D1Q68CQ7 371 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 ASCL4Q6XD76 172 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 GDPGP1Q6ZNW5 385 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 GPR141Q7Z602 305 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 FAM90A1Q86YD7 464 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 SAXO1Q8IYX7 474 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 PNLDC1Q8NA58 520 aaKnown RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 PXT1Q8NFP0 134 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 OR4D6Q8NGJ1 314 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 OR10K1Q8NGX5 313 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 SPATA3Q8NHX4 192 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 EMG1Q92979 244 aaKnown RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 FOXRED1Q96CU9 486 aaPredicted RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 KCTD7Q96MP8 289 aa7.16□□□□□ -1.26
NUP88-211ENST00000575976 NAA50Q9GZZ1 169 aaKnown RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 ELL3Q9HB65 397 aaPredicted RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 PATZ1Q9HBE1 687 aaKnown RBP7.16□□□□□ -1.26
NUP88-211ENST00000575976 HES4Q9HCC6 221 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms