RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 STX19Q8N4C7 294 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 PARP16Q8N5Y8 322 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 NANOGP1Q8N7R0 232 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 ZFP41Q8N8Y5 198 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 DNAAF1Q8NEP3 725 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 OR5T2Q8NGG2 359 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 OR13C5Q8NGS8 318 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 OR13C9Q8NGT0 318 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 OPALINQ96PE5 141 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 CDCA4Q9BXL8 241 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 COMMD4Q9H0A8 199 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 DNTTIP1Q9H147 329 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 DUSP21Q9H596 190 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 MTCH1Q9NZJ7 389 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 SLC7A11Q9UPY5 501 aa8.13□□□□□ -1.11
CLK3-220ENST00000567992 LSM2Q9Y333 95 aaKnown RBP8.13□□□□□ -1.11
CLK3-220ENST00000567992 TRBV5-5A0A0J9YX44 114 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 KIR2DS1A0A191URI9 304 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 OR2AT4A6NND4 320 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 DVL1O14640 695 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 MYL12BO14950 172 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 SERPINA3P01011 423 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 WNT4P56705 351 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 KLF17Q5JT82 389 aaPredicted RBP8.12□□□□□ -1.11
CLK3-220ENST00000567992 CD177Q8N6Q3 437 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 ZNF671Q8TAW3 534 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 TSEN15Q8WW01 171 aaKnown RBP8.12□□□□□ -1.11
CLK3-220ENST00000567992 RAB40AQ8WXH6 277 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 GHSRQ92847 366 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 SPSB1Q96BD6 273 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 TMIGD2Q96BF3 282 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 BORCS8Q96FH0 119 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 SDSLQ96GA7 329 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 ZCCHC4Q9H5U6 513 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 C7orf69Q9H7B7 122 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 RASL12Q9NYN1 266 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 DNAJB11Q9UBS4 358 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 SCOCQ9UIL1 159 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 RAB26Q9ULW5 256 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 DHDHQ9UQ10 334 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 POLDIP2Q9Y2S7 368 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 MAB21L2Q9Y586 359 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 COL6A5A8TX70 2615 aa8.12□□□□□ -1.11
CLK3-220ENST00000567992 IGKV1-12A0A0C4DH73 117 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 DPPA5A6NC42 116 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 PTGES3LE9PB15 166 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 SIGLEC5O15389 551 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 ALX3O95076 343 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 PLATP00750 562 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 IGKV1D-12P01611 117 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 PRKACBP22694 351 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 CRHBPP24387 322 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 SOX2P48431 317 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 CEBPDP49716 269 aaPredicted RBP8.11□□□□□ -1.11
CLK3-220ENST00000567992 RBP2P50120 134 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 ZP1P60852 638 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 ACSM1Q08AH1 577 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 IKZF1Q13422 519 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 MED21Q13503 144 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 TUSC1Q2TAM9 212 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 SMIM21Q3B7S5 101 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 LHFPL2Q6ZUX7 228 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 SLC25A26Q70HW3 274 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 SLC36A1Q7Z2H8 476 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 OR51A2Q8NGJ7 313 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 GPR148Q8TDV2 347 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 ST8SIA4Q92187 359 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 SLAMF9Q96A28 289 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 CNBD2Q96M20 576 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 SPACA5Q96QH8 159 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 OR5M11Q96RB7 305 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 NUDT16L1Q9BRJ7 211 aaKnown RBP8.11□□□□□ -1.11
CLK3-220ENST00000567992 CHCHD3Q9NX63 227 aaKnown RBP8.11□□□□□ -1.11
CLK3-220ENST00000567992 TAS2R4Q9NYW5 299 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 IL36RNQ9UBH0 155 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 ZNF281Q9Y2X9 895 aa8.11□□□□□ -1.11
CLK3-220ENST00000567992 TRBV5-7A0A0A0MS05 114 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 NKX6-3A6NJ46 265 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 RFPL4AA6NLU0 287 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 RFPL4AL1F8VTS6 287 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 DENRO43583 198 aaKnown RBP8.1□□□□□ -1.11
CLK3-220ENST00000567992 SPRY1O43609 319 aaPredicted RBP8.1□□□□□ -1.11
CLK3-220ENST00000567992 SULT1B1O43704 296 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 ENSAO43768 121 aaKnown RBP8.1□□□□□ -1.11
CLK3-220ENST00000567992 NXPH2O95156 264 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 CD1AP06126 327 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 OCM2P0CE71 109 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 PPIAL4GP0DN37 164 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 MMP9P14780 707 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 BCL3P20749 454 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 SRP14P37108 136 aaKnown RBP8.1□□□□□ -1.11
CLK3-220ENST00000567992 NPBWR2P48146 333 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 ATP1B3P54709 279 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 MTCP1P56278 107 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 TAS2R43P59537 309 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 IL13RA1P78552 427 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 BDH1Q02338 343 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 PDZK1IP1Q13113 114 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 C11orf91Q3C1V1 193 aa8.1□□□□□ -1.11
CLK3-220ENST00000567992 YIF1BQ5BJH7 314 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms