RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 NCF4Q15080 339 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 NKAIN1Q4KMZ8 207 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 TCEAL5Q5H9L2 206 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 AVPI1Q5T686 147 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 FBXW9Q5XUX1 488 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 LRRC34Q8IZ02 419 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 C8orf31Q8N9H6 132 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 SPERTQ8NA61 448 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 C11orf72Q8NBR9 251 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 OR11H7Q8NGC8 314 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 OR8U1Q8NH10 309 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 TCEAL3Q969E4 200 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 ISG20Q96AZ6 181 aaKnown RBP2.83□□□□□ -1.96
LINC00560-201ENST00000564593 DCPSQ96C86 337 aaKnown RBP2.83□□□□□ -1.96
LINC00560-201ENST00000564593 PAIP2Q9BPZ3 127 aaKnown RBP2.83□□□□□ -1.96
LINC00560-201ENST00000564593 CISHQ9NSE2 258 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 SLC39A1Q9NY26 324 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 COMMD3-BMI1R4GMX3 469 aa2.83□□□□□ -1.96
LINC00560-201ENST00000564593 TSC2P49815 1807 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 MIA3Q5JRA6 1907 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 SBF1O95248 1867 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 LOC100653049A0A140TA62 436 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 TMEM223A0PJW6 202 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 HACD1B0YJ81 288 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 M0QYV0 167 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 COPEO14579 308 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 BIRC5O15392 142 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 EDF1O60869 148 aaKnown RBP2.82□□□□□ -1.96
LINC00560-201ENST00000564593 FOXH1O75593 365 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 GCM2O75603 506 aaPredicted RBP2.82□□□□□ -1.96
LINC00560-201ENST00000564593 KRT34O76011 436 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 HPRT1P00492 218 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 NPPAP01160 153 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 ADRA2AP08913 450 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 CISD3P0C7P0 127 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 MLNP12872 115 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 RAB4AP20338 218 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 SDC4P31431 198 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 NBL1P41271 181 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 ACOT2P49753 483 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 RAB7AP51149 207 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 CLDN8P56748 225 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 ZNF121P58317 390 aaPredicted RBP2.82□□□□□ -1.96
LINC00560-201ENST00000564593 RPS15AP62244 130 aaKnown RBP2.82□□□□□ -1.96
LINC00560-201ENST00000564593 ELF3P78545 371 aaPredicted RBP2.82□□□□□ -1.96
LINC00560-201ENST00000564593 BASP1P80723 227 aaKnown RBP2.82□□□□□ -1.96
LINC00560-201ENST00000564593 LAMTOR4Q0VGL1 99 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 EIF4EBP1Q13541 118 aaPredicted RBP2.82□□□□□ -1.96
LINC00560-201ENST00000564593 KIR2DS1Q14954 304 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 PLCXD3Q63HM9 321 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 SNX20Q7Z614 316 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 WDR86Q86TI4 376 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 UNC93AQ86WB7 457 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 LRRC6Q86X45 466 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 CRLF3Q8IUI8 442 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 LRRC52Q8N7C0 313 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 FRZBQ92765 325 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 RBMXL1Q96E39 390 aaKnown RBP2.82□□□□□ -1.96
LINC00560-201ENST00000564593 RNF145Q96MT1 663 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 OPALINQ96PE5 141 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 CALN1Q9BXU9 219 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 XPNPEP1Q9NQW7 623 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 NECAP2Q9NVZ3 263 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 PEF1Q9UBV8 284 aaKnown RBP2.82□□□□□ -1.96
LINC00560-201ENST00000564593 C15orf41Q9Y2V0 281 aa2.82□□□□□ -1.96
LINC00560-201ENST00000564593 CABIN1Q9Y6J0 2220 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 A0A0U1RQV1 116 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 A0A1W2PRD5 423 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 ZNF705GA8MUZ8 300 aaPredicted RBP2.81□□□□□ -1.96
LINC00560-201ENST00000564593 NME4O00746 187 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 GYG2O15488 501 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 RBFOX2O43251 390 aaKnown RBP eCLIP2.81□□□□□ -1.96
LINC00560-201ENST00000564593 AKR7A2O43488 359 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 CST8O60676 142 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 SEMA3DO95025 777 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 YIF1AO95070 293 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 CRYGCP07315 174 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 KRT16P08779 473 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 SNRPAP09012 282 aaKnown RBP2.81□□□□□ -1.96
LINC00560-201ENST00000564593 KDELR1P24390 212 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 IVDP26440 423 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 RBM34P42696 430 aaKnown RBP2.81□□□□□ -1.96
LINC00560-201ENST00000564593 MAGEA6P43360 314 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 CCNG1P51959 295 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 SYNJ2BPP57105 145 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 NCALDP61601 193 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 INCA1Q0VD86 236 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 TRIP13Q15645 432 aaPredicted RBP2.81□□□□□ -1.96
LINC00560-201ENST00000564593 ZNF684Q5T5D7 378 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 C3orf62Q6ZUJ4 267 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 SETD3Q86TU7 594 aaPredicted RBP2.81□□□□□ -1.96
LINC00560-201ENST00000564593 ERO1BQ86YB8 467 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 APRG1Q8IVJ8 170 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 UBALD2Q8IYN6 164 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 LILRB4Q8NHJ6 448 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 ACTL9Q8TC94 416 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 GLYATL2Q8WU03 294 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 RGP1Q92546 391 aaPredicted RBP2.81□□□□□ -1.96
LINC00560-201ENST00000564593 PTX4Q96A99 478 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 FLYWCH2Q96CP2 140 aaKnown RBP2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms