RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 SMIM21Q3B7S5 101 aa18.12■□□□□ 0.49
SNX1-206ENST00000559389 ACP7Q6ZNF0 438 aa18.12■□□□□ 0.49
SNX1-206ENST00000559389 LRRTM1Q86UE6 522 aa18.12■□□□□ 0.49
SNX1-206ENST00000559389 MKXQ8IYA7 352 aa18.12■□□□□ 0.49
SNX1-206ENST00000559389 ZSCAN4Q8NAM6 433 aaPredicted RBP18.12■□□□□ 0.49
SNX1-206ENST00000559389 TMIGD2Q96BF3 282 aa18.12■□□□□ 0.49
SNX1-206ENST00000559389 C1orf159Q96HA4 380 aa18.12■□□□□ 0.49
SNX1-206ENST00000559389 NKX3-1Q99801 234 aaPredicted RBP18.12■□□□□ 0.49
SNX1-206ENST00000559389 NLKQ9UBE8 527 aa18.12■□□□□ 0.49
SNX1-206ENST00000559389 DNAJB11Q9UBS4 358 aa18.12■□□□□ 0.49
SNX1-206ENST00000559389 TNFRSF13BO14836 293 aaPredicted RBP18.11■□□□□ 0.49
SNX1-206ENST00000559389 ANGPTL7O43827 346 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 NXPH2O95156 264 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 HEXAP06865 529 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 ADRA2CP18825 462 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 OR3A4PP47883 348 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 SATL1Q86VE3 508 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 LYPD6Q86Y78 171 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 CDH26Q8IXH8 852 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 Q8IYB0 196 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 BATF2Q8N1L9 274 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 TNFAIP8L1Q8WVP5 186 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 GPER1Q99527 375 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 MRPS26Q9BYN8 205 aaKnown RBP18.11■□□□□ 0.49
SNX1-206ENST00000559389 SMURF1Q9HCE7 757 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 PCDHB10Q9UN67 800 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 STUB1Q9UNE7 303 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 CREBBPQ92793 2442 aa18.11■□□□□ 0.49
SNX1-206ENST00000559389 MEGF11A6BM72 1044 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 F8VVB4 439 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 F8VWA3 439 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 NDUFA2O43678 99 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 KDM4BO94953 1096 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 GYPAP02724 150 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 IGHV4-31P0DP07 118 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 RPS2P15880 293 aaKnown RBP18.1■□□□□ 0.49
SNX1-206ENST00000559389 CD36P16671 472 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 SRMP19623 302 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 CPT2P23786 658 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 CALRP27797 417 aaKnown RBP18.1■□□□□ 0.49
SNX1-206ENST00000559389 KRTAP1-1Q07627 177 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 LYPD2Q6UXB3 125 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 PNLDC1Q8NA58 520 aaKnown RBP18.1■□□□□ 0.49
SNX1-206ENST00000559389 PXT1Q8NFP0 134 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 OR51F2Q8NH61 342 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 SLITRK2Q9H156 845 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 SNTG1Q9NSN8 517 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 CTSZQ9UBR2 303 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 MIOXQ9UGB7 285 aa18.1■□□□□ 0.49
SNX1-206ENST00000559389 OR2AT4A6NND4 320 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 FAM157AC9JC47 383 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 TRAPPC2LH3BP13 241 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 WNT2P09544 360 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 TMEM225BP0DP42 221 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 BCL3P20749 454 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 FGF9P31371 208 aaPredicted RBP18.09■□□□□ 0.49
SNX1-206ENST00000559389 NPBWR2P48146 333 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 GZMKP49863 264 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 JAGN1Q8N5M9 183 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 NEIL1Q96FI4 390 aaPredicted RBP18.09■□□□□ 0.49
SNX1-206ENST00000559389 FAM192AQ9GZU8 254 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 DNTTIP1Q9H147 329 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 RBFOX1Q9NWB1 397 aaKnown RBP18.09■□□□□ 0.49
SNX1-206ENST00000559389 KAAG1Q9UBP8 84 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 ZNF222Q9UK12 451 aa18.09■□□□□ 0.49
SNX1-206ENST00000559389 IGKV1D-17A0A075B6S4 117 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 ADAM20O43506 726 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 KNG1P01042 644 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 PSG2P11465 335 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 AMY2BP19961 511 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 GADD45AP24522 165 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 PTGFRP43088 359 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 SEC61A1P61619 476 aaKnown RBP18.08■□□□□ 0.48
SNX1-206ENST00000559389 C22orf42Q6IC83 251 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 ASCL4Q6XD76 172 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 NLRC3Q7RTR2 1065 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 C1QL2Q7Z5L3 287 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 OR5T2Q8NGG2 359 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 OR8B3Q8NGG8 313 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 ANGPTL6Q8NI99 470 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 EMG1Q92979 244 aaKnown RBP18.08■□□□□ 0.48
SNX1-206ENST00000559389 YIPF6Q96EC8 236 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 OR8B2Q96RD0 313 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 OR51E2Q9H255 320 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 RHOFQ9HBH0 211 aa18.08■□□□□ 0.48
SNX1-206ENST00000559389 EXOSC4Q9NPD3 245 aaKnown RBP18.08■□□□□ 0.48
SNX1-206ENST00000559389 TXNL4BQ9NX01 149 aaKnown RBP18.08■□□□□ 0.48
SNX1-206ENST00000559389 ABCA2Q9BZC7 2435 aa18.07■□□□□ 0.48
SNX1-206ENST00000559389 NKX6-3A6NJ46 265 aa18.07■□□□□ 0.48
SNX1-206ENST00000559389 SFTPBP07988 381 aa18.07■□□□□ 0.48
SNX1-206ENST00000559389 ATPAF1Q5TC12 328 aaPredicted RBP18.07■□□□□ 0.48
SNX1-206ENST00000559389 UQCC2Q9BRT2 126 aa18.07■□□□□ 0.48
SNX1-206ENST00000559389 CNTD2Q9H8S5 307 aa18.07■□□□□ 0.48
SNX1-206ENST00000559389 HMG20AQ9NP66 347 aa18.07■□□□□ 0.48
SNX1-206ENST00000559389 IL36GQ9NZH8 169 aa18.07■□□□□ 0.48
SNX1-206ENST00000559389 SSR3Q9UNL2 185 aa18.07■□□□□ 0.48
SNX1-206ENST00000559389 YLPM1P49750 1951 aaKnown RBP18.07■□□□□ 0.48
SNX1-206ENST00000559389 FLNAP21333 2647 aaKnown RBP18.07■□□□□ 0.48
SNX1-206ENST00000559389 TRAV1-2A0A0B4J238 106 aa18.06■□□□□ 0.48
SNX1-206ENST00000559389 SHISA3A0PJX4 238 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms