RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 GSTZ1O43708 216 aaPredicted RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 GMFGO60234 142 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CACNG3O60359 315 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TPST2O60704 377 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 SMPD2O60906 423 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CDRT1O95170 752 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 NSA2O95478 260 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 AK1P00568 194 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 SERPINA3P01011 423 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TCRBP04435 133 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 IL5P05113 134 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 FABP3P05413 133 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 IGKV4-1P06312 121 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 RPA2P15927 270 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 HIST1H1BP16401 226 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ABOP16442 354 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CXCL2P19875 107 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 UQCRC2P22695 453 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CYP2F1P24903 491 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 PBLDP30039 288 aaPredicted RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 AKT2P31751 481 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 BTCP35070 178 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CRATP43155 626 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 KIR3DL2P43630 455 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 BDKRB1P46663 353 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 SLC6A8P48029 635 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 RGS4P49798 205 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CCL11P51671 97 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 PLK1P53350 603 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 RAB2AP61019 212 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 PKIAP61925 76 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 SNRPGP62308 76 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 SKP1P63208 163 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 DEFA5Q01523 94 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TNFRSF17Q02223 184 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 SEMG2Q02383 582 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 C2orf80Q0P641 193 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 BIKQ13323 160 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TPBGQ13641 420 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 PAFAH1B3Q15102 231 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TSNQ15631 228 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 NSDHLQ15738 373 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CEBPEQ15744 281 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CARD16Q5EG05 197 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM255AQ5JRV8 349 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ANXA8L1Q5VT79 327 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF660Q6AZW8 331 aaPredicted RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 FRMPD2BQ6IN97 320 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ENPP6Q6UWR7 440 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CASP12Q6UXS9 341 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ABHD13Q7L211 337 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 P4HA3Q7Z4N8 544 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 GOLGA7Q7Z5G4 137 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 YRDCQ86U90 279 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 OAFQ86UD1 273 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 NAA40Q86UY6 237 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TPRA1Q86W33 373 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 IFNEQ86WN2 208 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ZDHHC21Q8IVQ6 265 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 HS3ST5Q8IZT8 346 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 PUSL1Q8N0Z8 303 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 OR6V1Q8N148 313 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 GPR26Q8NDV2 337 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ATP6V1C2Q8NEY4 427 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 B3GNT7Q8NFL0 401 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 BPIFCQ8NFQ6 507 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 OR2T35Q8NGX2 323 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TWIST2Q8WVJ9 160 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 PHYHIPQ92561 330 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TFGQ92734 400 aaPredicted RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 MRPL38Q96DV4 380 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 KCTD7Q96MP8 289 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 DEFB118Q96PH6 123 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 KCNA7Q96RP8 456 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 PEBP4Q96S96 227 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 HBEGFQ99075 208 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 PKMYT1Q99640 499 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CMSS1Q9BQ75 279 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 UTP23Q9BRU9 249 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TRIM62Q9BVG3 475 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 GGACTQ9BVM4 153 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 SEC11CQ9BY50 192 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 NFKBIZQ9BYH8 718 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 MRPL37Q9BZE1 423 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 DEFB129Q9H1M3 183 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 REEP4Q9H6H4 257 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CACYBPQ9HB71 228 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 POPDC3Q9HBV1 291 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CRLF2Q9HC73 371 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 C14orf105Q9NVL8 296 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 CLN6Q9NWW5 311 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 TXNL4BQ9NX01 149 aaKnown RBP2.16□□□□□ -2.06
VPS13C-208ENST00000559119 C1orf109Q9NX04 203 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF226Q9NYT6 803 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 PIPOXQ9P0Z9 390 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 GHRLQ9UBU3 117 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 POFUT2Q9Y2G5 429 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 GSTK1Q9Y2Q3 226 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 KCNIP3Q9Y2W7 256 aa2.16□□□□□ -2.06
VPS13C-208ENST00000559119 WDR45Q9Y484 360 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms