RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 GLIPR1L1Q6UWM5 242 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 BOLLQ8N9W6 283 aaKnown RBP8.1□□□□□ -1.11
CUX1-216ENST00000558469 ZSCAN4Q8NAM6 433 aaPredicted RBP8.1□□□□□ -1.11
CUX1-216ENST00000558469 OR6M1Q8NGM8 313 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 Q8TCH9 128 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 LRRC29Q8WV35 223 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 RDH5Q92781 318 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 HPS1Q92902 700 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 YIPF5Q969M3 257 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 SLC25A28Q96A46 364 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 PERPQ96FX8 193 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 ZNF488Q96MN9 340 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 BARHL1Q9BZE3 327 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 SMURF1Q9HCE7 757 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 TMEM106BQ9NUM4 274 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 ZNF701Q9NV72 531 aaPredicted RBP8.1□□□□□ -1.11
CUX1-216ENST00000558469 DCAF16Q9NXF7 216 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 MTCH1Q9NZJ7 389 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 RNF7Q9UBF6 113 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 STEAP1Q9UHE8 339 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 UNC79Q9P2D8 2635 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 POLQO75417 2590 aa8.1□□□□□ -1.11
CUX1-216ENST00000558469 A0A0B4J203 849 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 F8VVB4 439 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 F8VWA3 439 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 TMEM178BH3BS89 294 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 IFNL4K9M1U5 179 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 WNT9BO14905 357 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 NXPH2O95156 264 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 ZNF205O95201 554 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 HTR3BO95264 441 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 LHBP01229 141 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 PGA5P0DJD9 388 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 CALCBP10092 127 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 ARSBP15848 533 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 PAX1P15863 534 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 SERPINA2P20848 420 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 NPBWR2P48146 333 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 MRPS11P82912 194 aaKnown RBP8.09□□□□□ -1.11
CUX1-216ENST00000558469 ZNF181Q2M3W8 571 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 SLC22A6Q4U2R8 563 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 ASCL4Q6XD76 172 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 CROCCP3Q8IVE0 287 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 SAXO1Q8IYX7 474 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 GCSAMQ8N6F7 178 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 POC1AQ8NBT0 407 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 PXT1Q8NFP0 134 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 OR51D1Q8NGF3 324 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 OR10K1Q8NGX5 313 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 OR10Z1Q8NGY1 313 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 TBC1D15Q8TC07 691 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 DYNC2LI1Q8TCX1 351 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 CEP19Q96LK0 163 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 METTL9Q9H1A3 318 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 KCNK15Q9H427 330 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 LIN7BQ9HAP6 207 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 DLL4Q9NR61 685 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 BEX4Q9NWD9 120 aaPredicted RBP8.09□□□□□ -1.11
CUX1-216ENST00000558469 PDZD2O15018 2839 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 DOCK11Q5JSL3 2073 aa8.09□□□□□ -1.11
CUX1-216ENST00000558469 CSMD2Q7Z408 3487 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 SRRM5B3KS81 715 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 NOS1APO75052 506 aaPredicted RBP8.08□□□□□ -1.12
CUX1-216ENST00000558469 CRTAPO75718 401 aaPredicted RBP8.08□□□□□ -1.12
CUX1-216ENST00000558469 KDM4BO94953 1096 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 BPNT1O95861 308 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 CSTBP04080 98 aaKnown RBP8.08□□□□□ -1.12
CUX1-216ENST00000558469 SFTPBP07988 381 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 ACAA1P09110 424 aaPredicted RBP8.08□□□□□ -1.12
CUX1-216ENST00000558469 UBBP0CG47 229 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 SNRPBP14678 240 aaKnown RBP8.08□□□□□ -1.12
CUX1-216ENST00000558469 ZNF182P17025 639 aaPredicted RBP8.08□□□□□ -1.12
CUX1-216ENST00000558469 EGR1P18146 543 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 GLRA1P23415 457 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 CFPP27918 469 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 CD80P33681 288 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 SOX6P35712 828 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 CFHR2P36980 270 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 ERVK11-1P61568 191 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 GPR176Q14439 515 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 DEFB113Q30KQ7 82 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 C2orf76Q3KRA6 126 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 FAM201AQ5SY85 155 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 SFRP4Q6FHJ7 346 aaPredicted RBP8.08□□□□□ -1.12
CUX1-216ENST00000558469 Q8IYB0 196 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 C1orf87Q8N0U7 546 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 ZNF525Q8N782 197 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 C19orf18Q8NEA5 215 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 EMG1Q92979 244 aaKnown RBP8.08□□□□□ -1.12
CUX1-216ENST00000558469 FAM46BQ96A09 425 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 FAM3DQ96BQ1 224 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 SEH1LQ96EE3 360 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 C1orf147Q96MC9 270 aaPredicted RBP8.08□□□□□ -1.12
CUX1-216ENST00000558469 NRIP2Q9BQI9 281 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 DCUN1D5Q9BTE7 237 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 GSX2Q9BZM3 304 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 WDR13Q9H1Z4 485 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 BARX1Q9HBU1 254 aaPredicted RBP8.08□□□□□ -1.12
CUX1-216ENST00000558469 PCDHB16Q9NRJ7 776 aa8.08□□□□□ -1.12
CUX1-216ENST00000558469 RBFOX1Q9NWB1 397 aaKnown RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms