RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 IGKV3D-15A0A087WSY6 115 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 A0A0G2JMM0 328 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF816-ZNF321PA0A0X1KG74 233 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 hCG_38984A0A1B0GV85 526 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 A0A1W2PPB8 328 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 A0A1W2PRS3 328 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 C5orf63A6NC05 138 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 KIR3DP1A8MWS1 328 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 F8VVB4 439 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 F8VWA3 439 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 BET1O15155 118 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 NRASP01111 189 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 CTSDP07339 412 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 B4GALT1P15291 398 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 ANOS1P23352 680 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 GABRR1P24046 479 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 RBMXP38159 391 aaKnown RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 PMELP40967 661 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 RGS19P49795 217 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 FUT6P51993 359 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 GFRA1P56159 465 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 RPS18P62269 152 aaKnown RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 ATXN7L3Q14CW9 347 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 OR8B8Q15620 311 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 CEACAM16Q2WEN9 425 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 WIPI1Q5MNZ9 446 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 XP32Q5T750 250 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 ABHD17BQ5VST6 288 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 AADACL3Q5VUY0 350 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 C1QL2Q7Z5L3 287 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 SGPP2Q8IWX5 399 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 STPG2Q8N412 459 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 ZSCAN4Q8NAM6 433 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 CCDC120Q96HB5 630 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 IP6K3Q96PC2 410 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 ALKBH3Q96Q83 286 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 RTBDNQ9BSG5 229 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 PRDM14Q9GZV8 571 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 PIGMQ9H3S5 423 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 METTL8Q9H825 291 aaKnown RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 BCO1Q9HAY6 547 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 NECAP2Q9NVZ3 263 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 PARPBPQ9NWS1 579 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 PRSS44E7EML9 344 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 TEX46H3BTG2 121 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 TAAR5O14804 337 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 SYNGR4O95473 234 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 IFNA2P01563 188 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 COX5BP10606 129 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 ACKR3P25106 362 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 MPLP40238 635 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 PSG4Q00888 419 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 SMCO1Q147U7 214 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 SLC9A3R2Q15599 337 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 NKAPLQ5M9Q1 402 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 EIF5AL1Q6IS14 154 aaKnown RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 RPUSD3Q6P087 351 aaKnown RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 RTN4RL2Q86UN3 420 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 ROBO4Q8WZ75 1007 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF837Q96EG3 531 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 PIK3IP1Q96FE7 263 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 THOC3Q96J01 351 aaKnown RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 LOXL4Q96JB6 756 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 LINC00052Q96N35 136 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 AQP10Q96PS8 301 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 CMSS1Q9BQ75 279 aaKnown RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 LRFN3Q9BTN0 628 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 SHARPINQ9H0F6 387 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 WNT5BQ9H1J7 359 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 OPA3Q9H6K4 179 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 RNF122Q9H9V4 155 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 PRDM6Q9NQX0 595 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 DECR2Q9NUI1 292 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 LRFN1Q9P244 771 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 ANXA10Q9UJ72 324 aa6.32□□□□□ -1.4
VPS13C-206ENST00000558338 NOSIPQ9Y314 301 aaKnown RBP6.32□□□□□ -1.4
VPS13C-206ENST00000558338 EYSQ5T1H1 3165 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM230AA0A1W2PPH8 454 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 RAB19A4D1S5 217 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A10PA6NDY2 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A18PA6NE21 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A16PA6NEW6 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A20PA6NIJ5 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A8PA6NJQ4 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A7PA6NKC0 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A22PA8MWA6 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A12PA8MX19 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A5PA8MXJ8 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A23PA8MXZ1 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 MRPL33O75394 65 aaKnown RBP6.31□□□□□ -1.4
VPS13C-206ENST00000558338 IFNA21P01568 189 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 RFPL3SP0C7P2 107 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A15PP0C7V4 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A13PP0C7W8 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A14PP0C7W9 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 FAM90A24PP0C7X0 464 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 CHATP28329 748 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 CLDN15P56746 228 aa6.31□□□□□ -1.4
VPS13C-206ENST00000558338 PPIAP62937 165 aaKnown RBP6.31□□□□□ -1.4
VPS13C-206ENST00000558338 SUPT4H1P63272 117 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms