RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CALCRP30988 508 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 RRADP55042 308 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 PDZK1IP1Q13113 114 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 RSU1Q15404 277 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 C3AR1Q16581 482 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 ZNF766Q5HY98 468 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 MRPS24Q96EL2 167 aaKnown RBP11.91□□□□□ -0.5
RTN3-210ENST00000540798 RTBDNQ9BSG5 229 aaPredicted RBP11.91□□□□□ -0.5
RTN3-210ENST00000540798 ST6GALNAC5Q9BVH7 336 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 ELL3Q9HB65 397 aaPredicted RBP11.91□□□□□ -0.5
RTN3-210ENST00000540798 SPRR3Q9UBC9 169 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 ZNF175Q9Y473 711 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 FXYD6-FXYD2A0A087WZ82 144 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 LRP3O75074 770 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 CHATP28329 748 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 ATP1B3P54709 279 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 C3P1Q6ZMU1 363 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 Q8NFD4 153 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 PRRG4Q9BZD6 226 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 FXYD6Q9H0Q3 95 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 GP6Q9HCN6 339 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 ZNF318Q5VUA4 2279 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 A0A0B4J2A0 478 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 RAB19A4D1S5 217 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 OR5H14A6NHG9 310 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 HTR3BO95264 441 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 GABRR1P24046 479 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 SURF2Q15527 256 aaPredicted RBP11.91□□□□□ -0.5
RTN3-210ENST00000540798 IGF2-ASQ6U949 168 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 DEFB124Q8NES8 71 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 CSNK2A3Q8NEV1 391 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 POM121Q96HA1 1249 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 SCGB3A2Q96PL1 93 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 SHPKQ9UHJ6 478 aa11.91□□□□□ -0.5
RTN3-210ENST00000540798 KNTC1P50748 2209 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 ZNF407Q9C0G0 2248 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 IGKV1D-8A0A087WSZ0 117 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 A0A096LPE4 126 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 A0A1W2PPZ6 126 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 HLA-HP01893 362 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 AKR1C4P17516 323 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 ARR3P36575 388 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 C21orf62-AS1Q17RA5 79 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 LIN54Q6MZP7 749 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 TMEM17Q86X19 198 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 DECR2Q9NUI1 292 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 PLEKHJ1Q9NW61 149 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 EDARQ9UNE0 448 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 SLC7A11Q9UPY5 501 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 PTPRBP23467 1997 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 SERPINA5P05154 406 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 BTF3P20290 206 aaKnown RBP11.9□□□□□ -0.5
RTN3-210ENST00000540798 DTYMKP23919 212 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 MPGP29372 298 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 AGTR1P30556 359 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 NPY4RP50391 375 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 TNFSF10P50591 281 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 SUPT4H1P63272 117 aaKnown RBP11.9□□□□□ -0.5
RTN3-210ENST00000540798 DAZAP2Q15038 168 aaPredicted RBP11.9□□□□□ -0.5
RTN3-210ENST00000540798 MOB3CQ70IA8 216 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 ZSCAN4Q8NAM6 433 aaPredicted RBP11.9□□□□□ -0.5
RTN3-210ENST00000540798 TMEM178AQ8NBL3 297 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 OR6K3Q8NGY3 331 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 POM121L2Q96KW2 1035 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 GSX2Q9BZM3 304 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 PPA2Q9H2U2 334 aa11.9□□□□□ -0.5
RTN3-210ENST00000540798 TRGV5A0A0B4J1U4 118 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 BET1O15155 118 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 SFT2D2O95562 160 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 CSTBP04080 98 aaKnown RBP11.89□□□□□ -0.51
RTN3-210ENST00000540798 RPS2P15880 293 aaKnown RBP11.89□□□□□ -0.51
RTN3-210ENST00000540798 ARG2P78540 354 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 C9orf135Q5VTT2 229 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 PLCXD3Q63HM9 321 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 IGFL2Q6UWQ7 119 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 COMMD7Q86VX2 200 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 ZNF581Q9P0T4 197 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 PQLC2LA1A4F0 135 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 CCSO14618 274 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 RP2O75695 350 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 OR3A2P47893 321 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 ZNF345Q14585 488 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 ZNF660Q6AZW8 331 aaPredicted RBP11.89□□□□□ -0.51
RTN3-210ENST00000540798 C11orf87Q6NUJ2 197 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 OSR2Q8N2R0 312 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 MAFIPQ8WZ33 124 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 PIGCQ92535 297 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 APOBEC3DQ96AK3 386 aaPredicted RBP11.89□□□□□ -0.51
RTN3-210ENST00000540798 DEFB127Q9H1M4 99 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 EHFQ9NZC4 300 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 AK3Q9UIJ7 227 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 KIF25Q9UIL4 384 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 TNFSF18Q9UNG2 199 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 CST4P01036 141 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 PMELP40967 661 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 TAF9Q16594 264 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 DPPA2Q7Z7J5 298 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 MARVELD3Q96A59 401 aa11.89□□□□□ -0.51
RTN3-210ENST00000540798 HDHD3Q9BSH5 251 aaPredicted RBP11.89□□□□□ -0.51
RTN3-210ENST00000540798 FGF23Q9GZV9 251 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms