RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 C2orf76Q3KRA6 126 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 Q499Y3 187 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 CT45A2Q5DJT8 189 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 IER5LQ5T953 404 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 CLEC18BQ6UXF7 455 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 SLCO4C1Q6ZQN7 724 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 ZNF550Q7Z398 422 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 NECAP1Q8NC96 275 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 NPEPL1Q8NDH3 523 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 OR5AR1Q8NGP9 310 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 OR1N2Q8NGR9 330 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 MARCH1Q8TCQ1 289 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 RNF128Q8TEB7 428 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 IGSF8Q969P0 613 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 SLC46A1Q96NT5 459 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 AIF1LQ9BQI0 150 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 SLC46A2Q9BY10 475 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 MRPL27Q9P0M9 148 aaKnown RBP8.33□□□□□ -1.08
CLIP1-214ENST00000540539 P2RX2Q9UBL9 471 aa8.33□□□□□ -1.08
CLIP1-214ENST00000540539 BORCS7-ASMTA0A0B4J1R7 106 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 DKK1O94907 266 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 THY1P04216 161 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 GNB3P16520 340 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 RPS4Y1P22090 263 aaKnown RBP8.32□□□□□ -1.08
CLIP1-214ENST00000540539 PRLHRP49683 370 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 KHKP50053 298 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 SGSHP51688 502 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 TAS2R31P59538 309 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 PAX2Q02962 417 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 ZNF92Q03936 586 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 LASP1Q14847 261 aaKnown RBP8.32□□□□□ -1.08
CLIP1-214ENST00000540539 TMEM176BQ3YBM2 270 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-214ENST00000540539 FAM90A2PQ658T7 463 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 FAM151BQ6UXP7 276 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 RNF166Q96A37 237 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-214ENST00000540539 TMEM230Q96A57 120 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 FAM3DQ96BQ1 224 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 SZT2Q5T011 3432 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 DENND4CQ5VZ89 1909 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 G3V4G9 280 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 RBFOX2O43251 390 aaKnown RBP eCLIP8.32□□□□□ -1.08
CLIP1-214ENST00000540539 RAB9AP51151 201 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 SPATA45Q537H7 98 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 TMEM128Q5BJH2 165 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 NXPE1Q8N323 547 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 OR51L1Q8NGJ5 315 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 PTPMT1Q8WUK0 201 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-214ENST00000540539 SKA2Q8WVK7 121 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-214ENST00000540539 MACROD1Q9BQ69 325 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 CCDC3Q9BQI4 270 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 RAB11FIP5Q9BXF6 653 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 CTDSP1Q9GZU7 261 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 PLK3Q9H4B4 646 aa8.32□□□□□ -1.08
CLIP1-214ENST00000540539 IGHV1-69-2A0A0G2JMI3 117 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 RIIAD1A6NNX1 92 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 ZNF891A8MT65 544 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-214ENST00000540539 GDF9O60383 454 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 PRAMEF11O60813 436 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 RAMP3O60896 148 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 LILRA1O75019 489 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 SFT2D2O95562 160 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 DDAH2O95865 285 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 SCGB1A1P11684 91 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 TCN2P20062 427 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 PSG3Q16557 428 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 PCK2Q16822 640 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 CLEC12BQ2HXU8 276 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 TCEAL5Q5H9L2 206 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 TMEM225Q6GV28 225 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 SLC35F2Q8IXU6 374 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 ZNF683Q8IZ20 524 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 OR51G1Q8NGK1 321 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 CXorf40AQ8TE69 158 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 EID2BQ96D98 161 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 Q96M85 177 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 ADOQ96SZ5 270 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 HCFC2Q9Y5Z7 792 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 BRWD1Q9NSI6 2320 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 PLXND1Q9Y4D7 1925 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 FITM1A5D6W6 292 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 MAP1LC3B2A6NCE7 125 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 F5H5T6 163 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 RAMP2O60895 175 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 DEDDO75618 318 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 ADH1BP00325 375 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 HMGA1P17096 107 aaKnown RBP8.31□□□□□ -1.08
CLIP1-214ENST00000540539 COL9A1P20849 921 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 HRH1P35367 487 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 PGFP49763 221 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 SUPT4H1P63272 117 aaKnown RBP8.31□□□□□ -1.08
CLIP1-214ENST00000540539 TAF10Q12962 218 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 HSPB3Q12988 150 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 C5orf64Q2M2E5 130 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 PRAMEF5Q5TYX0 476 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 PRAMEF6Q5VXH4 476 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 OR4C11Q6IEV9 310 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 ABHD12BQ7Z5M8 362 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-214ENST00000540539 GJD3Q8N144 294 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 GVQW1Q8N7I0 195 aa8.31□□□□□ -1.08
CLIP1-214ENST00000540539 OR4D6Q8NGJ1 314 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms