RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 ODF4Q2M2E3 257 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 HCP5Q6MZN7 132 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 Q6ZSR3 168 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 SSX6Q7RTT6 188 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 MKXQ8IYA7 352 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 OR10H4Q8NGA5 316 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 ADI1Q9BV57 179 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 PKIBQ9C010 78 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 PPA2Q9H2U2 334 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 RIBC2Q9H4K1 309 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 HEXA-AS1Q9H8Q6 139 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 OR14J1Q9UGF5 321 aa13.21□□□□□ -0.29
CLSTN3-204ENST00000535313 VWFP04275 2813 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 FAM230AA0A1W2PPH8 454 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 METTL15A6NJ78 407 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 H3BUX3 64 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 SYT7O43581 403 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 CIB2O75838 187 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 SULT1C4O75897 302 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 TSPAN9O75954 239 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 CCL1P22362 96 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 POLR2IP36954 125 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 CEBPDP49716 269 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 DEFA6Q01524 100 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 TMEM200BQ69YZ2 307 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 CATSPERDQ86XM0 798 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 ANGPTL5Q86XS5 388 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 BATF2Q8N1L9 274 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 CCDC54Q8NEL0 328 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 OR4M1Q8NGD0 313 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 OR8J1Q8NGP2 316 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 TRMT10AQ8TBZ6 339 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 RFKQ969G6 155 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 UBE2FQ969M7 185 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 CENPNQ96H22 339 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 SSX3Q99909 188 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 GABARAPL3Q9BY60 117 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 MMP27Q9H306 513 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 HES4Q9HCC6 221 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 USE1Q9NZ43 259 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 OAZ3Q9UMX2 235 aa13.2□□□□□ -0.3
CLSTN3-204ENST00000535313 CMYA5Q8N3K9 4069 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 NOTCH1P46531 2555 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 GATBO75879 557 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 APOL3O95236 402 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 SERPINA3P01011 423 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 TK1P04183 234 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 LGALS4P56470 323 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 IL24Q13007 206 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 TMED1Q13445 227 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 ZSCAN26Q16670 478 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 ASPHD2Q6ICH7 369 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 CALHM1Q8IU99 346 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 C17orf50Q8WW18 174 aa13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 RBM4BQ9BQ04 359 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-204ENST00000535313 ANKRD65E5RJM6 399 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 H3BSH0 61 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 COX7A1P24310 79 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 GABRA5P31644 462 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 ERVFRD-1P60508 538 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 CDC42P60953 191 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 ERVK11-1P61568 191 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 AANATQ16613 207 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 LRRC75BQ2VPJ9 315 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 FAM220AQ7Z4H9 259 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 ASCC1Q8N9N2 400 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 RORBQ92753 470 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 OSBPL10Q9BXB5 764 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 MEGF9Q9H1U4 602 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 RAB18Q9NP72 206 aa13.18□□□□□ -0.3
CLSTN3-204ENST00000535313 SAC3D1A6NKF1 404 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 K7N7A8 449 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 CHRM2P08172 466 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 PIPP12273 146 aaPredicted RBP13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 CCL3L1P16619 93 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 FUT6P51993 359 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 COL10A1Q03692 680 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 ZNF273Q14593 569 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 KPNB1Q14974 876 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 UBE2V2Q15819 145 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 LY6EQ16553 131 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 SLC35E4Q6ICL7 350 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 C11orf42Q8N5U0 333 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 EME1Q96AY2 570 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 C10orf35Q96D05 121 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 CEP19Q96LK0 163 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 CHST5Q9GZS9 411 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 IMPAD1Q9NX62 359 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 GNG8Q9UK08 70 aa13.17□□□□□ -0.3
CLSTN3-204ENST00000535313 H3BNX3 289 aa13.16□□□□□ -0.3
CLSTN3-204ENST00000535313 UBCP0CG48 685 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-204ENST00000535313 BMXP51813 675 aa13.16□□□□□ -0.3
CLSTN3-204ENST00000535313 CNN3Q15417 329 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-204ENST00000535313 ZNF782Q6ZMW2 699 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-204ENST00000535313 GDPD3Q7L5L3 318 aa13.16□□□□□ -0.3
CLSTN3-204ENST00000535313 OR4C13Q8NGP0 309 aa13.16□□□□□ -0.3
CLSTN3-204ENST00000535313 TRUB1Q8WWH5 349 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-204ENST00000535313 SLAMF9Q96A28 289 aa13.16□□□□□ -0.3
CLSTN3-204ENST00000535313 BORCS8Q96FH0 119 aa13.16□□□□□ -0.3
CLSTN3-204ENST00000535313 AJUBAQ96IF1 538 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms