RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 ZNF436Q9C0F3 470 aaPredicted RBP2.68□□□□□ -1.98
USP48-215ENST00000534705 MOB1AQ9H8S9 216 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 FOLH1BQ9HBA9 442 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 C19orf12Q9NSK7 152 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 TREX1Q9NSU2 369 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 MED17Q9NVC6 651 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 NLE1Q9NVX2 485 aaPredicted RBP2.68□□□□□ -1.98
USP48-215ENST00000534705 C1orf123Q9NWV4 160 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 CD274Q9NZQ7 290 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 COPZ2Q9P299 210 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 SLC2A6Q9UGQ3 507 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 ZNF346Q9UL40 294 aaKnown RBP2.68□□□□□ -1.98
USP48-215ENST00000534705 TPRKBQ9Y3C4 175 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 PPIAL4AQ9Y536 164 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 ALG5Q9Y673 324 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 CDH10Q9Y6N8 788 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 NBASA2RRP1 2371 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 PCNX1Q96RV3 2341 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 CACNA1CQ13936 2221 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 ESPL1Q14674 2120 aa2.68□□□□□ -1.98
USP48-215ENST00000534705 PHF3Q92576 2039 aaKnown RBP2.68□□□□□ -1.98
USP48-215ENST00000534705 DOPEY2Q9Y3R5 2298 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 FLNCQ14315 2725 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 RELNP78509 3460 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 DIDO1Q9BTC0 2240 aaKnown RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 ZNF407Q9C0G0 2248 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 MEIKINA0A087WXM9 373 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 LOC100130705A0A1B0GUX0 176 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 SLC5A10A0PJK1 596 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 OR6C74A6NCV1 312 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 MGAT4DA6NG13 374 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 OR2AG2A6NM03 316 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 LRRC30A6NM36 301 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 A8MU10 97 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 ZNF732B4DXR9 585 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 MKRN2OSH3BPM6 223 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 GFYI3L273 518 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 K7EQG2 157 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 BTN3A3O00478 584 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 MRASO14807 208 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 RTL8CO15255 209 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 FABP7O15540 132 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 SGCEO43556 437 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 AIREO43918 545 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 OR1I1O60431 355 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 TSPAN2O60636 221 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 GALR3O60755 368 aaPredicted RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 STX11O75558 287 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 UPK3AO75631 287 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 CRTAPO75718 401 aaPredicted RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 STK17BO94768 372 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 ANGPTL1O95841 491 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 RLN2P04090 185 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 CRYGBP07316 175 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 STAG3L2P0CL84 134 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 SULT1A3P0DMM9 295 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 SULT1A4P0DMN0 295 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 CCL4P13236 92 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 ATP1B2P14415 290 aaPredicted RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 CPN1P15169 458 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 TSPAN8P19075 237 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 RPS3P23396 243 aaKnown RBP eCLIP2.67□□□□□ -1.98
USP48-215ENST00000534705 GADD45AP24522 165 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 OTX1P32242 354 aaPredicted RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 MAS1LP35410 378 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 TGFBR1P36897 503 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 RPL35P42766 123 aaKnown RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 MAGEA2P43356 314 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 HTR5AP47898 357 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 GSK3BP49841 420 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 GFERP55789 205 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 NDUFV3P56181 108 aaKnown RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 ERVPABLB-1P60509 514 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 PPP1CAP62136 330 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 CRADDP78560 199 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 HOXC5Q00444 222 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 MFGE8Q08431 387 aaPredicted RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 SRSF6Q13247 344 aaKnown RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 SERTAD2Q14140 314 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 QPRTQ15274 297 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 SYPL1Q16563 259 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 LINC01620Q4KN68 170 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 C6orf226Q5I0X4 101 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 OR2B11Q5JQS5 317 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 SAPCD1Q5SSQ6 148 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 RNLSQ5VYX0 342 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 ZNF470Q6ECI4 717 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 KCNIP4Q6PIL6 250 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 TMEM220Q6QAJ8 160 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 WDR74Q6RFH5 385 aaPredicted RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 PAMR1Q6UXH9 720 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 CASP12Q6UXS9 341 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 BAIAP2L2Q6UXY1 529 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 C17orf107Q6ZR85 190 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 SERPINA9Q86WD7 417 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 CCDC71Q8IV32 467 aaPredicted RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 ENTHD1Q8IYW4 607 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 C12orf45Q8N5I9 185 aaPredicted RBP2.67□□□□□ -1.98
USP48-215ENST00000534705 CLDN19Q8N6F1 224 aa2.67□□□□□ -1.98
USP48-215ENST00000534705 STXBP6Q8NFX7 210 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms