RNA–Protein interactions for RNA: ENST00000532504.5

PPFIA1-222, Transcript of PTPRF interacting protein alpha 1, human

TSL 1 (best)

Gene PPFIA1, Length 5,159 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPFIA1-222	ENST00000532504	CATSPERD	Q86XM0	798 aa		13.74	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SLC25A31	Q9H0C2	315 aa		13.74	□□□□□ -0.21
PPFIA1-222	ENST00000532504	PRO3102	Q9H379	93 aa		13.74	□□□□□ -0.21
PPFIA1-222	ENST00000532504		M0R1X1	148 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	UQCC2	Q9BRT2	126 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	TECTA	O75443	2155 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	PINLYP	A6NC86	204 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SERPINE3	A8MV23	424 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	UBAC2	Q8NBM4	344 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	OR51A4	Q8NGJ6	313 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SNRNP40	Q96DI7	357 aa	Known RBP	13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SLC25A21	Q9BQT8	299 aa	Predicted RBP	13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	PPIL3	Q9H2H8	161 aa	Known RBP	13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	KLK11	Q9UBX7	282 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SSX1	Q16384	188 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	OR5D13	Q8NGL4	314 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	POC1B	Q8TC44	478 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	CLN8	Q9UBY8	286 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	ANKRD36	A6QL64	1941 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	TMEM272	A0A1B0GTI8	110 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SSX5	O60225	188 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	BCL3	P20749	454 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	CEACAM6	P40199	344 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	ATP5J2	P56134	94 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SSX8	Q7RTT4	187 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	FYTTD1	Q96QD9	318 aa	Known RBP	13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	OR5V1	Q9UGF6	321 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	PSG11	Q9UQ72	335 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SSUH2	Q9Y2M2	353 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	NEUROG3	Q9Y4Z2	214 aa		13.73	□□□□□ -0.21
PPFIA1-222	ENST00000532504	CCS	O14618	274 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	OR3A1	P47881	315 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	ZNF816	Q0VGE8	651 aa	Predicted RBP	13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SLC25A47	Q6Q0C1	308 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	C17orf78	Q8N4C9	275 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	ZNF488	Q96MN9	340 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	C20orf85	Q9H1P6	137 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	METTL17	Q9H7H0	456 aa	Predicted RBP	13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	C1QTNF9B	B2RNN3	333 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	C1QTNF9	P0C862	333 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	DCTD	P32321	178 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	CD80	P33681	288 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SERPINF1	P36955	418 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	RFLNB	Q8N5W9	214 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	RBMXL3	Q8N7X1	1067 aa	Known RBP	13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	CBR1	P16152	277 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	ZNF708	P17019	499 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	ECI1	P42126	302 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	GLCCI1	Q86VQ1	547 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	C9orf106	Q8NAJ2	232 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	ZFP62	Q8NB50	900 aa	Predicted RBP	13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	COMMD5	Q9GZQ3	224 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	ROS1	P08922	2347 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504		A0A1W2PNV4	684 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	OR8G2P	Q6IF36	304 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	MARCH1	Q8TCQ1	289 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	GAL3ST2	Q9H3Q3	398 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	CHODL	Q9H9P2	273 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504	ARID1A	O14497	2285 aa		13.72	□□□□□ -0.21
PPFIA1-222	ENST00000532504		A0A1W2PPV4	95 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	OR4C45	A6NMZ5	311 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	SIX6	O95475	246 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	EVX1	P49640	407 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	PINX1	Q96BK5	328 aa	Known RBP	13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	CCDC88C	Q9P219	2028 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	NAT2	P11245	290 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	RAB11A	P62491	216 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	ACSF3	Q4G176	576 aa	Predicted RBP	13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	DMKN	Q6E0U4	476 aa	Predicted RBP	13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	LRRTM1	Q86UE6	522 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	DYNC2LI1	Q8TCX1	351 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	OR2V2	Q96R30	315 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	NMNAT2	Q9BZQ4	307 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	NKX2-6	A6NCS4	301 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	FABP7	O15540	132 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504		Q6ZT83	130 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	AMELY	Q99218	206 aa		13.71	□□□□□ -0.21
PPFIA1-222	ENST00000532504	TRAV39	A0A0B4J263	110 aa		13.71	□□□□□ -0.22
PPFIA1-222	ENST00000532504		K7EPK0	472 aa		13.71	□□□□□ -0.22
PPFIA1-222	ENST00000532504	XRCC3	O43542	346 aa		13.71	□□□□□ -0.22
PPFIA1-222	ENST00000532504	PDCD6	O75340	191 aa		13.71	□□□□□ -0.22
PPFIA1-222	ENST00000532504	CRYBB2	P43320	205 aa		13.71	□□□□□ -0.22
PPFIA1-222	ENST00000532504	RAB13	P51153	203 aa		13.71	□□□□□ -0.22
PPFIA1-222	ENST00000532504	CLINT1	Q14677	625 aa		13.71	□□□□□ -0.22
PPFIA1-222	ENST00000532504	FAM71E2	Q8N5Q1	922 aa		13.71	□□□□□ -0.22
PPFIA1-222	ENST00000532504	WDYHV1	Q96HA8	205 aa		13.71	□□□□□ -0.22
PPFIA1-222	ENST00000532504	MAP6	Q96JE9	813 aa		13.71	□□□□□ -0.22
PPFIA1-222	ENST00000532504	FRMPD3	Q5JV73	1810 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	MED6	O75586	246 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	HAND1	O96004	215 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504		Q0VFX4	171 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	STUM	Q69YW2	141 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	HYLS1	Q96M11	299 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	TMPRSS13	Q9BYE2	586 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	FBXO7	Q9Y3I1	522 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	PCDHGA9	Q9Y5G4	932 aa	Known RBP	13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	NPIPB9	F8W1W9	429 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	PYCARD-AS1	I3L0S3	204 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	GPR37	O15354	613 aa		13.7	□□□□□ -0.22
PPFIA1-222	ENST00000532504	ASCL1	P50553	236 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms