RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ACP7Q6ZNF0 438 aa13.2□□□□□ -0.3
UPF3A-208ENST00000484246 C1orf229Q6ZS94 237 aaPredicted RBP13.2□□□□□ -0.3
UPF3A-208ENST00000484246 C1QL2Q7Z5L3 287 aa13.2□□□□□ -0.3
UPF3A-208ENST00000484246 OR5D14Q8NGL3 314 aa13.2□□□□□ -0.3
UPF3A-208ENST00000484246 TSEN15Q8WW01 171 aaKnown RBP13.2□□□□□ -0.3
UPF3A-208ENST00000484246 RAB40AQ8WXH6 277 aa13.2□□□□□ -0.3
UPF3A-208ENST00000484246 SEH1LQ96EE3 360 aa13.2□□□□□ -0.3
UPF3A-208ENST00000484246 SDSLQ96GA7 329 aa13.2□□□□□ -0.3
UPF3A-208ENST00000484246 SEBOXQ9HB31 216 aaPredicted RBP13.2□□□□□ -0.3
UPF3A-208ENST00000484246 LSM2Q9Y333 95 aaKnown RBP13.2□□□□□ -0.3
UPF3A-208ENST00000484246 KIR2DS1A0A191URI9 304 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 C22orf46C9J442 243 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 SIGLEC5O15389 551 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 SULT1B1O43704 296 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 ENSAO43768 121 aaKnown RBP13.19□□□□□ -0.3
UPF3A-208ENST00000484246 PSG2P11465 335 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 ATP1B3P54709 279 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 RPS11P62280 158 aaKnown RBP eCLIP13.19□□□□□ -0.3
UPF3A-208ENST00000484246 DOC2BQ14184 412 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 RBM48Q5RL73 367 aaKnown RBP13.19□□□□□ -0.3
UPF3A-208ENST00000484246 ASPHD2Q6ICH7 369 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 FAHD2BQ6P2I3 314 aaPredicted RBP13.19□□□□□ -0.3
UPF3A-208ENST00000484246 ANGPTL5Q86XS5 388 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 Q8IYB0 196 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 OR13C9Q8NGT0 318 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 NPRL2Q8WTW4 380 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 GHSRQ92847 366 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 FAHD2AQ96GK7 314 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 GAFA1Q96PS6 74 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 CCL13Q99616 98 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 BLOC1S6Q9UL45 172 aa13.19□□□□□ -0.3
UPF3A-208ENST00000484246 IGKV1D-17A0A075B6S4 117 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 LOC105371242A0A075B767 164 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 PTGES3LE9PB15 166 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 DVL1O14640 695 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 DENRO43583 198 aaKnown RBP13.18□□□□□ -0.3
UPF3A-208ENST00000484246 KNG1P01042 644 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 AVPP01185 164 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 LIPFP07098 398 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 MTCP1P56278 107 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 CAV3P56539 151 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 IL13RA1P78552 427 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 CRIP3Q6Q6R5 217 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 BTNL3Q6UXE8 466 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 IL17RELQ6ZVW7 336 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 PRSS48Q7RTY5 328 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 SAXO1Q8IYX7 474 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 FAM216BQ8N7L0 139 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 SGCDQ92629 289 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 THRSPQ92748 146 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 TMEM106AQ96A25 262 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 CPNE2Q96FN4 548 aaPredicted RBP13.18□□□□□ -0.3
UPF3A-208ENST00000484246 MED30Q96HR3 178 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 CEP19Q96LK0 163 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 CNBD2Q96M20 576 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 RASSF4Q9H2L5 321 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 Q9H521 79 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 C7orf69Q9H7B7 122 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 RHOFQ9HBH0 211 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 MTCH1Q9NZJ7 389 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 FBN3Q75N90 2809 aa13.18□□□□□ -0.3
UPF3A-208ENST00000484246 A0A1B0GW55 424 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 RGS10O43665 173 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 GPX5O75715 221 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 NXPH2O95156 264 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 OCM2P0CE71 109 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 DUX4L2P0CJ85 424 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 DUX4L3P0CJ86 424 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 DUX4L4P0CJ87 422 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 DUX4L5P0CJ88 424 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 DUX4L6P0CJ89 424 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 DUX4L7P0CJ90 424 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 FSTP19883 344 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 PDZK1IP1Q13113 114 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 SCGB2A2Q13296 93 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 SPHARQ15513 63 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 Q499Y3 187 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 LRRC10Q5BKY1 277 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 DUX4L9Q6RFH8 374 aaPredicted RBP13.17□□□□□ -0.3
UPF3A-208ENST00000484246 SLC25A26Q70HW3 274 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 PRIMA1Q86XR5 153 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 MKXQ8IYA7 352 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 ZSCAN4Q8NAM6 433 aaPredicted RBP13.17□□□□□ -0.3
UPF3A-208ENST00000484246 C8orf46Q8TAG6 207 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 ZNF488Q96MN9 340 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 NUDT16L1Q9BRJ7 211 aaKnown RBP13.17□□□□□ -0.3
UPF3A-208ENST00000484246 MRI1Q9BV20 369 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 SNTG1Q9NSN8 517 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 DUX4Q9UBX2 424 aa13.17□□□□□ -0.3
UPF3A-208ENST00000484246 NIPBLQ6KC79 2804 aaeCLIP13.17□□□□□ -0.3
UPF3A-208ENST00000484246 TRBV5-7A0A0A0MS05 114 aa13.16□□□□□ -0.3
UPF3A-208ENST00000484246 NDUFB3O43676 98 aa13.16□□□□□ -0.3
UPF3A-208ENST00000484246 MRPS14O60783 128 aaKnown RBP13.16□□□□□ -0.3
UPF3A-208ENST00000484246 ALDOBP05062 364 aa13.16□□□□□ -0.3
UPF3A-208ENST00000484246 CELP19835 753 aa13.16□□□□□ -0.3
UPF3A-208ENST00000484246 RAB3AP20336 220 aa13.16□□□□□ -0.3
UPF3A-208ENST00000484246 SRP14P37108 136 aaKnown RBP13.16□□□□□ -0.3
UPF3A-208ENST00000484246 SOX2P48431 317 aa13.16□□□□□ -0.3
UPF3A-208ENST00000484246 ZP1P60852 638 aa13.16□□□□□ -0.3
UPF3A-208ENST00000484246 GMFBP60983 142 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms