RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SYT6Q5T7P8 510 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 TMEM136Q6ZRR5 245 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 PID1Q7Z2X4 250 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 DAZ4Q86SG3 579 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 ITPRIPQ8IWB1 547 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 SGPP2Q8IWX5 399 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 CA13Q8N1Q1 262 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 LINC00337Q8N6G1 96 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 OR6N2Q8NGY6 317 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 NT5CQ8TCD5 201 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF75CPQ92670 426 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 YIPF6Q96EC8 236 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 SMIM8Q96KF7 97 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 SPACA5Q96QH8 159 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 MRPL20Q9BYC9 149 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 SYT4Q9H2B2 425 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 LHX5Q9H2C1 402 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 SLC38A1Q9H2H9 487 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 DAZ1Q9NQZ3 744 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 STMN3Q9NZ72 180 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 STX18Q9P2W9 335 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 PRO0628Q9UI54 55 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 RAB23Q9ULC3 237 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 ACOT9Q9Y305 439 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 ADGRL1O94910 1474 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 SLC5A10A0PJK1 596 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF233A6NK53 670 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 VGLL3A8MV65 326 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 UPK1AO00322 258 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 RNF113AO15541 343 aaKnown RBP1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 SC5DO75845 299 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 DHRS3O75911 302 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 VAPBO95292 243 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 IGHV1-46P01743 117 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 PFN1P07737 140 aaKnown RBP1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 SEC11BP0C7V7 166 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 DEKP35659 375 aaKnown RBP1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 RPS11P62280 158 aaKnown RBP eCLIP1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 RPL10AP62906 217 aaKnown RBP1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 ATP5G2Q06055 141 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 TRDNQ13061 729 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 LINC00303Q3SY05 128 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 TMEM69Q5SWH9 247 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 FAM104BQ5XKR9 115 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 KCTD16Q68DU8 428 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 FAM131AQ6UXB0 335 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 CLEC19AQ6UXS0 136 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 PRNTQ86SH4 94 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 LRRC8AQ8IWT6 810 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 NELFCDQ8IXH7 590 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 CYP4Z2PQ8N1L4 340 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 SYS1Q8N2H4 156 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 CCNYL1Q8N7R7 359 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF680Q8NEM1 530 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 RILPQ96NA2 401 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 METTL26Q96S19 204 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 SEC22CQ9BRL7 303 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 BEX2Q9BXY8 128 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 ANGPTL4Q9BY76 406 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 VCX3AQ9NNX9 186 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 SDHAF2Q9NX18 166 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 HMGXB4Q9UGU5 601 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 ANXA10Q9UJ72 324 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 AP3M1Q9Y2T2 418 aa1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 KLF13Q9Y2Y9 288 aaPredicted RBP1.45□□□□□ -2.18
CCDC88A-212ENST00000474059 OR6C70A6NIJ9 312 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 ZNF593O00488 134 aaPredicted RBP1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 ZMPSTE24O75844 475 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 FSTL3O95633 263 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 NRASP01111 189 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 HRASP01112 189 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 KRASP01116 189 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 OR5AC1P0C628 307 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 CCDC172P0C7W6 258 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 BGNP21810 368 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 HLA-DMAP28067 261 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 TEAD1P28347 426 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 GPR4P46093 362 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 OR12D2P58182 307 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 MEF2BQ02080 365 aaPredicted RBP1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 MEF2CQ06413 473 aaPredicted RBP1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 ELOCQ15369 112 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 BRD3OSQ6XYD6 125 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 FAM231DQ6ZW35 169 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 FAM19A1Q7Z5A9 133 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 ATPAF2Q8N5M1 289 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 ZDHHC22Q8N966 263 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 LINC00304Q8N9R0 145 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 C1orf64Q8NEQ6 169 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 OR4D6Q8NGJ1 314 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 OR6K2Q8NGY2 324 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 ITLN2Q8WWU7 325 aaPredicted RBP1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 CDKL2Q92772 493 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 TNFRSF14Q92956 283 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 LRRC39Q96DD0 335 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 ADTRPQ96IZ2 230 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 SHANK2-AS3Q9BTD1 123 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 HINT2Q9BX68 163 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 SHCBP1LQ9BZQ2 653 aa1.44□□□□□ -2.18
CCDC88A-212ENST00000474059 API5Q9BZZ5 524 aaKnown RBP1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms