RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SLC7A11Q9UPY5 501 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 ORC6Q9Y5N6 252 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 VWFP04275 2813 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 KIAA2026Q5HYC2 2103 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 CLPSL1A2RUU4 121 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 EI24O14681 340 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 ANGPTL7O43827 346 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 SULT1C4O75897 302 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 UBE2E1P51965 193 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 RPL15P61313 204 aaKnown RBP12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 ZNF85Q03923 595 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 TMED1Q13445 227 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 KPNB1Q14974 876 aaKnown RBP12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 ZIK1Q3SY52 487 aaPredicted RBP12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 BRICD5Q6PL45 260 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 PRSS35Q8N3Z0 413 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 ZNF561Q8N587 486 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 OR4M1Q8NGD0 313 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 NRIP2Q9BQI9 281 aa12.85□□□□□ -0.35
CCDC88B-205ENST00000472524 LOC107986453A0A1B0GWG9 222 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 NOS1APO75052 506 aaPredicted RBP12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 INMTO95050 263 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 ALPLP05186 524 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 MPZP25189 248 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 RPL31P62899 125 aaKnown RBP12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 UBE2V2Q15819 145 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 GDPGP1Q6ZNW5 385 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 MKXQ8IYA7 352 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 OR5D13Q8NGL4 314 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 HES4Q9HCC6 221 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 VPREB3Q9UKI3 123 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 RNF114Q9Y508 228 aa12.84□□□□□ -0.35
CCDC88B-205ENST00000472524 H3BNX3 289 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 ENTPD6O75354 484 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 GATBO75879 557 aaKnown RBP12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 UBCP0CG48 685 aaKnown RBP12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 PIPP12273 146 aaPredicted RBP12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 KIR3DL2P43630 455 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 KRTAP10-3P60369 221 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 ACSM1Q08AH1 577 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 IL24Q13007 206 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 TMEM200BQ69YZ2 307 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 DHRS7BQ6IAN0 325 aaPredicted RBP12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 HCP5Q6MZN7 132 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 CCDC121Q6ZUS5 278 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 RDH10Q8IZV5 341 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 C17orf50Q8WW18 174 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 SLAMF9Q96A28 289 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 RNFT2Q96EX2 444 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 PKIBQ9C010 78 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 CHST5Q9GZS9 411 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 USE1Q9NZ43 259 aa12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 SF3B6Q9Y3B4 125 aaKnown RBP12.83□□□□□ -0.36
CCDC88B-205ENST00000472524 IGKV1-27A0A075B6S5 117 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 A0A1W2PPH5 198 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 TK1P04183 234 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 CCL3L1P16619 93 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 COX7A1P24310 79 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 FUT6P51993 359 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 COL10A1Q03692 680 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 ZNF273Q14593 569 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 OCLNQ16625 522 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 ZFP1Q6P2D0 407 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 Q6ZSV7 163 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 ASCC1Q8N9N2 400 aaKnown RBP12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 CCDC54Q8NEL0 328 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 LINC01006Q8NI28 216 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 TRUB1Q8WWH5 349 aaKnown RBP12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 BORCS8Q96FH0 119 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 HRASLS5Q96KN8 279 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 CEP19Q96LK0 163 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 CITED1Q99966 193 aa12.82□□□□□ -0.36
CCDC88B-205ENST00000472524 DAPL1A0PJW8 107 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 MEX3AA1L020 520 aaKnown RBP12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 F8VVB4 439 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 F8VWA3 439 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 SERPINA3P01011 423 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 PAX6P26367 422 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 ALDH3A2P51648 485 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 ERVFRD-1P60508 538 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 ISL1P61371 349 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 ERVK11-1P61568 191 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 ACTC1P68032 377 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 ACTA1P68133 377 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 CNN3Q15417 329 aaKnown RBP12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 SLC25A26Q70HW3 274 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 CBR4Q8N4T8 237 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 BEND2Q8NDZ0 799 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 OR2G2Q8NGZ5 317 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 OR5R1Q8NH85 324 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 MTCH1Q9NZJ7 389 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 AASSQ9UDR5 926 aa12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 TET2Q6N021 2002 aaPredicted RBP12.81□□□□□ -0.36
CCDC88B-205ENST00000472524 H3BUX3 64 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 BMXP51813 675 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 OR12D2P58182 307 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 SNRPGP62308 76 aaKnown RBP12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 LY6EQ16553 131 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 TMEM244Q5VVB8 128 aa12.8□□□□□ -0.36
CCDC88B-205ENST00000472524 MEDAGQ5VYS4 303 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms