RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SLC25A32Q9H2D1 315 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 GHRLQ9UBU3 117 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 SESN1Q9Y6P5 492 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 ZNF503-AS2A6NEH8 195 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 CST2P09228 141 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 ICAM2P13598 275 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 EDN3P14138 238 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 NPBWR2P48146 333 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 RBP2P50120 134 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 S100A10P60903 97 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 PAN3Q58A45 887 aaKnown RBP16.56■□□□□ 0.24
VIM-203ENST00000469543 PABPC1L2AQ5JQF8 200 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 CPT1CQ8TCG5 803 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 TMED6Q8WW62 240 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 KCNE4Q8WWG9 221 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 BORCS8Q96FH0 119 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 NARS2Q96I59 477 aaKnown RBP16.56■□□□□ 0.24
VIM-203ENST00000469543 ARPC5LQ9BPX5 153 aa16.56■□□□□ 0.24
VIM-203ENST00000469543 SERPINA7P05543 415 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 CNR1P21554 472 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 CLEC9AQ6UXN8 241 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 TMEM17Q86X19 198 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 OR10AD1Q8NGE0 317 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 PIK3IP1Q96FE7 263 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 CALHM2Q9HA72 323 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 SLC7A10Q9NS82 523 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 TIMM10BQ9Y5J6 103 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 HLA-HP01893 362 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 MAGEA5P43359 124 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 TAS2R46P59540 309 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 FXYD4P59646 89 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 PPIAP62937 165 aaKnown RBP16.55■□□□□ 0.24
VIM-203ENST00000469543 H3F3CQ6NXT2 135 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 Q6ZPA2 131 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 TUSC5Q8IXB3 177 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 HS3ST6Q96QI5 342 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 NMES1Q9C002 83 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 METTL9Q9H1A3 318 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 PCDHB10Q9UN67 800 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 R4GN57 208 aa16.55■□□□□ 0.24
VIM-203ENST00000469543 CNOT1A5YKK6 2376 aaKnown RBP16.55■□□□□ 0.24
VIM-203ENST00000469543 ZNF850A8MQ14 1090 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 NOVA1P51513 510 aaKnown RBP16.54■□□□□ 0.24
VIM-203ENST00000469543 SRSF3P84103 164 aaKnown RBP16.54■□□□□ 0.24
VIM-203ENST00000469543 SCRN3Q0VDG4 424 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 ACTBL2Q562R1 376 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 Q6ZSR3 168 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.54■□□□□ 0.24
VIM-203ENST00000469543 CYTL1Q9NRR1 136 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 ANXA10Q9UJ72 324 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 APOC1P02654 83 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 GP1BAP07359 652 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 OR5H8P0DN80 308 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 HSD17B13Q7Z5P4 300 aaPredicted RBP16.54■□□□□ 0.24
VIM-203ENST00000469543 BPIFCQ8NFQ6 507 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 FNDC9Q8TBE3 224 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 PRRG4Q9BZD6 226 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 FAM117AQ9C073 453 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 SLC6A15Q9H2J7 730 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 ASF1BQ9NVP2 202 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 ST3GAL6Q9Y274 331 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 PCNX2A6NKB5 2137 aa16.54■□□□□ 0.24
VIM-203ENST00000469543 COL27A1Q8IZC6 1860 aaPredicted RBP16.54■□□□□ 0.24
VIM-203ENST00000469543 CBX5P45973 191 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 ABLIM2Q6H8Q1 611 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 RAB18Q9NP72 206 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 IL17BQ9UHF5 180 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 KRBOX1C9JBD0 128 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 F8VVB4 439 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 F8VWA3 439 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 IGFBP7Q16270 282 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 VASH2Q86V25 355 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 CMSS1Q9BQ75 279 aaKnown RBP16.53■□□□□ 0.24
VIM-203ENST00000469543 NOSIPQ9Y314 301 aaKnown RBP16.53■□□□□ 0.24
VIM-203ENST00000469543 PRR14LQ5THK1 2151 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 MRPL33O75394 65 aaKnown RBP16.53■□□□□ 0.24
VIM-203ENST00000469543 DEFA5Q01523 94 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 SPEM2Q0P670 501 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 PLCXD3Q63HM9 321 aa16.53■□□□□ 0.24
VIM-203ENST00000469543 MGAQ8IWI9 3026 aa16.52■□□□□ 0.24
VIM-203ENST00000469543 TEX13DA0A0J9YY54 714 aaPredicted RBP16.52■□□□□ 0.24
VIM-203ENST00000469543 hCG_38984A0A1B0GV85 526 aa16.52■□□□□ 0.24
VIM-203ENST00000469543 MMP7P09237 267 aaPredicted RBP16.52■□□□□ 0.24
VIM-203ENST00000469543 ATF4P18848 351 aaPredicted RBP16.52■□□□□ 0.24
VIM-203ENST00000469543 ITGA3P26006 1051 aa16.52■□□□□ 0.24
VIM-203ENST00000469543 ARF1P84077 181 aaKnown RBP16.52■□□□□ 0.24
VIM-203ENST00000469543 DAZAP2Q15038 168 aaPredicted RBP16.52■□□□□ 0.24
VIM-203ENST00000469543 FAM189A2Q15884 450 aa16.52■□□□□ 0.24
VIM-203ENST00000469543 OR2A2Q6IF42 318 aa16.52■□□□□ 0.24
VIM-203ENST00000469543 SPRY4Q9C004 299 aa16.52■□□□□ 0.24
VIM-203ENST00000469543 CYTIPO60759 359 aa16.52■□□□□ 0.23
VIM-203ENST00000469543 RBM39Q14498 530 aaKnown RBP16.52■□□□□ 0.23
VIM-203ENST00000469543 PHLDA2Q53GA4 152 aa16.52■□□□□ 0.23
VIM-203ENST00000469543 OR2M7Q8NG81 312 aa16.52■□□□□ 0.23
VIM-203ENST00000469543 SPSB1Q96BD6 273 aa16.52■□□□□ 0.23
VIM-203ENST00000469543 GPHA2Q96T91 129 aa16.52■□□□□ 0.23
VIM-203ENST00000469543 OR51B6Q9H340 312 aa16.52■□□□□ 0.23
VIM-203ENST00000469543 DCHS1Q96JQ0 3298 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 TRBV6-7A0A0A0MS04 114 aa16.51■□□□□ 0.23
VIM-203ENST00000469543 PDZK1IP1Q13113 114 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms