RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ARL2P36404 184 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 GALR1P47211 349 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 GZMMP51124 257 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF133P52736 654 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 OR12D2P58182 307 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 TPI1P60174 286 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 RRAS2P62070 204 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 RPS18P62269 152 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 BTG1P62324 171 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 RPL8P62917 257 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 HIST1H3AP68431 136 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 H3F3AP84243 136 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 CDK5Q00535 292 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 IFITM2Q01629 132 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 RPL18AQ02543 176 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 EIF2B1Q14232 305 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 PARP15Q460N3 678 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 PAPPA-AS1Q5QFB9 102 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 DCAF10Q5QP82 559 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 DCST2Q5T1A1 773 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 RWDD4Q6NW29 188 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 PLET1Q6UQ28 207 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 RASSF6Q6ZTQ3 369 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 HIST2H3AQ71DI3 136 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 CBLN2Q8IUK8 224 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 OR4N5Q8IXE1 308 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 UBAC2Q8NBM4 344 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF439Q8NDP4 499 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 PYROXD1Q8WU10 500 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 PPCDCQ96CD2 204 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 LRRC58Q96CX6 371 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 COL21A1Q96P44 957 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 TBX15Q96SF7 602 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF382Q96SR6 550 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 C20orf144Q9BQM9 153 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 VSIRQ9H7M9 311 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 IDI2-AS1Q9NZ38 188 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 DOK5Q9P104 306 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 ING4Q9UNL4 249 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 CARHSP1Q9Y2V2 147 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 OR51B2Q9Y5P1 312 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 PTPRJQ12913 1337 aa3.93□□□□□ -1.78
CCDC88A-210ENST00000468534 ERICH3Q5RHP9 1530 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 A0A1W2PRE2 83 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 MAP1LC3B2A6NCE7 125 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 SMKR1H3BMG3 65 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 TNFRSF11BO00300 401 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 NME4O00746 187 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 RAMP1O60894 148 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 TNFSF15O95150 251 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 PTTG1O95997 202 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 CSF3P09919 207 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF806P0C7X5 589 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 SULT1A3P0DMM9 295 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 SULT1A4P0DMN0 295 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 RPL35AP18077 110 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 FMO3P31513 532 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 SAA4P35542 130 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 OR1E2P47887 323 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 RAB38P57729 211 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 TAS2R43P59537 309 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 SELENOTP62341 195 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 RAP1AP62834 184 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 CDK10Q15131 360 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 CLEC12BQ2HXU8 276 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 CLEC12AQ5QGZ9 265 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 ATAD3CQ5T2N8 411 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 TEX36Q5VZQ5 186 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 PVRIGQ6DKI7 326 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 C12orf54Q6X4T0 127 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 CARM1Q86X55 608 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 DAW1Q8N136 415 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 OR2T12Q8NG77 320 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 OR4D11Q8NGI4 311 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 OR13C4Q8NGS5 318 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNRF2Q8NHG8 242 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 GNPDA2Q8TDQ7 276 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 ACOT12Q8WYK0 555 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 TAF15Q92804 592 aaKnown RBP eCLIP3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 GPR21Q99679 349 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 MARVELD1Q9BSK0 173 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 C1orf50Q9BV19 199 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 RSPO3Q9BXY4 272 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 MAP1LC3BQ9GZQ8 125 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 ZDHHC11Q9H8X9 412 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 EXOSC4Q9NPD3 245 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 KCNJ16Q9NPI9 418 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 COMMD9Q9P000 198 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 GNPTGQ9UJJ9 305 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 GNG8Q9UK08 70 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 L3MBTL1Q9Y468 752 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 RBM7Q9Y580 266 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 WSB1Q9Y6I7 421 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 CD109Q6YHK3 1445 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 FGD6Q6ZV73 1430 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 ASTN1O14525 1302 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 CCDC180Q9P1Z9 1646 aa3.92□□□□□ -1.78
CCDC88A-210ENST00000468534 FAM135AQ9P2D6 1515 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 ZNF587BE7ETH6 402 aa3.91□□□□□ -1.78
CCDC88A-210ENST00000468534 FCN1O00602 326 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms