RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 Q6ZTK2 550 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 OR2W3Q7Z3T1 314 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 GABRG1Q8N1C3 465 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 SLC22A24Q8N4F4 322 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 CISD2Q8N5K1 135 aaKnown RBP6.79□□□□□ -1.32
USP54-210ENST00000466048 HSD17B11Q8NBQ5 300 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 OR1S2Q8NGQ3 325 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 CXorf58Q96LI9 332 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 ANGPTL4Q9BY76 406 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 OR51I2Q9H344 312 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 TUBD1Q9UJT1 453 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 A0A0U1RQK1 487 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 K7ERU9 68 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 DXOO77932 396 aaKnown RBP6.79□□□□□ -1.32
USP54-210ENST00000466048 TK1P04183 234 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 ADRA2AP08913 450 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 FXYD4P59646 89 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 RAB11AP62491 216 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 CDK5R1Q15078 307 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 SLC25A53Q5H9E4 307 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 DMKNQ6E0U4 476 aaPredicted RBP6.79□□□□□ -1.32
USP54-210ENST00000466048 BTNL8Q6UX41 500 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 LYG2Q86SG7 212 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 C2orf50Q96LR7 162 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 TMPRSS13Q9BYE2 586 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 TP53TG5Q9Y2B4 290 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 TNRC6BQ9UPQ9 1833 aaKnown RBP6.79□□□□□ -1.32
USP54-210ENST00000466048 ACACAQ13085 2346 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 FAM90A27PA6NNH2 459 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 GYPBP06028 91 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 SERPINA2P20848 420 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 TGFBR1P36897 503 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 ATP1B3P54709 279 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 MEX3BQ6ZN04 569 aaKnown RBP6.79□□□□□ -1.32
USP54-210ENST00000466048 OR5M1Q8NGP8 315 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 WDR89Q96FK6 387 aaPredicted RBP6.79□□□□□ -1.32
USP54-210ENST00000466048 MOGAT1Q96PD6 335 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 TSPAN32Q96QS1 320 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 TMEM59Q9BXS4 323 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 OR51B6Q9H340 312 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 ESRP2Q9H6T0 727 aaKnown RBP6.79□□□□□ -1.32
USP54-210ENST00000466048 BET1LQ9NYM9 111 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 TIMM8BQ9Y5J9 83 aaPredicted RBP6.79□□□□□ -1.32
USP54-210ENST00000466048 LOC101059948A0A1B0GTJ6 334 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 PRSS37A4D1T9 235 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 ZNF727A8MUV8 499 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 CDX4O14627 284 aaPredicted RBP6.79□□□□□ -1.32
USP54-210ENST00000466048 AKR7A3O95154 331 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 CST4P01036 141 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 POU3F4P49335 361 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 PDZD11Q5EBL8 140 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 ZNF362Q5T0B9 420 aaPredicted RBP6.79□□□□□ -1.32
USP54-210ENST00000466048 C20orf24Q9BUV8 137 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 SERTAD4Q9NUC0 356 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 DNAJB11Q9UBS4 358 aa6.79□□□□□ -1.32
USP54-210ENST00000466048 TIAF1O95411 115 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 F13BP05160 661 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 RPLP1P05386 114 aaKnown RBP6.78□□□□□ -1.32
USP54-210ENST00000466048 SULT1A3P0DMM9 295 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 SULT1A4P0DMN0 295 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 COX6A1P12074 109 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 DUSP1P28562 367 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 RPL12P30050 165 aaKnown RBP6.78□□□□□ -1.32
USP54-210ENST00000466048 PNRC1Q12796 327 aaPredicted RBP6.78□□□□□ -1.32
USP54-210ENST00000466048 FHL1Q13642 323 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 GSG1Q2KHT4 349 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 C1orf185Q5T7R7 199 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 PPP1R32Q7Z5V6 425 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 MKXQ8IYA7 352 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 EMG1Q92979 244 aaKnown RBP6.78□□□□□ -1.32
USP54-210ENST00000466048 SEH1LQ96EE3 360 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 ISG20L2Q9H9L3 353 aaKnown RBP6.78□□□□□ -1.32
USP54-210ENST00000466048 GP6Q9HCN6 339 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 OBP2BQ9NPH6 170 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 FOXJ2Q9P0K8 574 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 ZNF391Q9UJN7 358 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 ZC3H12DA2A288 527 aaKnown RBP6.78□□□□□ -1.32
USP54-210ENST00000466048 IFITM5A6NNB3 132 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 F5H5K5 113 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 F6UZH7 168 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 RAB27BO00194 218 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 PLPP3O14495 311 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 DHHO43323 396 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 TIMM8AO60220 97 aaPredicted RBP6.78□□□□□ -1.32
USP54-210ENST00000466048 FABP4P15090 132 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 FCGR2CP31995 323 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 CD96P40200 585 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 EGR4Q05215 589 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 PCOLCEQ15113 449 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 PDLIM3Q53GG5 364 aaPredicted RBP6.78□□□□□ -1.32
USP54-210ENST00000466048 OR52W1Q6IF63 320 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 ETFRF1Q6IPR1 90 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 TMEM108Q6UXF1 575 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 ASCL5Q7RTU5 278 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 NUFIP2Q7Z417 695 aaKnown RBP6.78□□□□□ -1.32
USP54-210ENST00000466048 BMPERQ8N8U9 685 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 PPP1R1CQ8WVI7 109 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 C22orf15Q8WYQ4 148 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 EXTL1Q92935 676 aa6.78□□□□□ -1.32
USP54-210ENST00000466048 UBL7Q96S82 380 aaPredicted RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms