RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 FUT3P21217 361 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 ACAA2P42765 397 aaKnown RBP8.26□□□□□ -1.09
COL28A1-201ENST00000399429 GLIPR1P48060 266 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 RRADP55042 308 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 GABREP78334 506 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 EWSR1Q01844 656 aaKnown RBP eCLIP8.26□□□□□ -1.09
COL28A1-201ENST00000399429 PDCD1Q15116 288 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 NPSR1Q6W5P4 371 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 GKN2Q86XP6 184 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 CARFQ8N187 725 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 C22orf15Q8WYQ4 148 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 LINC00615Q96LM1 132 aaPredicted RBP8.26□□□□□ -1.09
COL28A1-201ENST00000399429 TMEM100Q9NV29 134 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 ATXN7O15265 892 aaPredicted RBP8.26□□□□□ -1.09
COL28A1-201ENST00000399429 APOA2P02652 100 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 DYNLT3P51808 116 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 UBE2G2P60604 165 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 PPP1CBP62140 327 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 IL13RA2Q14627 380 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 CST9Q5W186 159 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 ADAMTS18Q8TE60 1221 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 OR1E3Q8WZA6 343 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 FAM3CQ92520 227 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 NTNG2Q96CW9 530 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 APOOQ9BUR5 198 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 RSPO3Q9BXY4 272 aaPredicted RBP8.26□□□□□ -1.09
COL28A1-201ENST00000399429 CYTL1Q9NRR1 136 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 PPP1R14DQ9NXH3 145 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 SPINK4O60575 86 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 CDC14BO60729 498 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 BCKDHBP21953 392 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 ERVFC1-1P60608 527 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 TMEM267Q0VDI3 215 aaPredicted RBP8.26□□□□□ -1.09
COL28A1-201ENST00000399429 TIMM29Q9BSF4 260 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 S1PR5Q9H228 398 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 PIGLQ9Y2B2 252 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 DNAJC13O75165 2243 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 TRBV5-7A0A0A0MS05 114 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 MAP1LC3B2A6NCE7 125 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 C9J4A7 227 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 OR2J2O76002 312 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 IGHV2-5P01817 119 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 TTRP02766 147 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 OTX2P32243 289 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 TFPI2P48307 235 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 ELOBQ15370 118 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 PHYHD1Q5SRE7 291 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 LEMD1Q68G75 181 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 ADAMTSL4Q6UY14 1074 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 ZNF764Q96H86 408 aaPredicted RBP8.26□□□□□ -1.09
COL28A1-201ENST00000399429 MAP1LC3BQ9GZQ8 125 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 Q9N2K0 584 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 TNFRSF10CO14798 259 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 HCRTR1O43613 425 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 ZNF737O75373 536 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 CYB5R3P00387 301 aaPredicted RBP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 RELQ04864 619 aaPredicted RBP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 SRSF5Q13243 272 aaKnown RBP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 GPM6BQ13491 265 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 JOSD1Q15040 202 aaPredicted RBP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 LDLRAD1Q5T700 205 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 AADACL3Q5VUY0 350 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 ZNF776Q68DI1 518 aaPredicted RBP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 SHISA6Q6ZSJ9 500 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 C16orf82Q7Z2V1 217 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 ZNF664Q8N3J9 261 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 KLHDC1Q8N7A1 406 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 OR13G1Q8NGZ3 307 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 ZNF775Q96BV0 537 aaPredicted RBP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 FAAP24Q9BTP7 215 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 TXNIPQ9H3M7 391 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 NAA60Q9H7X0 242 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 COL11A1P12107 1806 aaPredicted RBP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 DLEU1O43261 78 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 NKX2-2O95096 273 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 FABP6P51161 128 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 HNRNPKP61978 463 aaKnown RBP eCLIP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 ZNF154Q13106 437 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 FZD5Q13467 585 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 SLC35E3Q7Z769 313 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 SLC25A43Q8WUT9 341 aaPredicted RBP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 MCHR2Q969V1 340 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 MUCL1Q96DR8 90 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 TIMP4Q99727 224 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 SMDT1Q9H4I9 107 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 MYOZ1Q9NP98 299 aaPredicted RBP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 SLC2A9Q9NRM0 540 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 LYRM2Q9NU23 88 aaPredicted RBP8.25□□□□□ -1.09
COL28A1-201ENST00000399429 BET1LQ9NYM9 111 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 TBC1D29Q9UFV1 150 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 CES1P1Q9UKY3 287 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 PIAS3Q9Y6X2 628 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 MYLKQ15746 1914 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 ANK1P16157 1881 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 SERPINE3A8MV23 424 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 ADAM20O43506 726 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 IL2RAP01589 272 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 IGHG1P01857 330 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 HLA-DOBP13765 273 aa8.25□□□□□ -1.09
COL28A1-201ENST00000399429 CNN1P51911 297 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms