RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SIGLEC7Q9Y286 467 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 TRAT1Q6PIZ9 186 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 TMEM116Q8NCL8 245 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.6□□□□□ -0.71
SYNPO-202ENST00000394243 ERRFI1Q9UJM3 462 aaPredicted RBP10.6□□□□□ -0.71
SYNPO-202ENST00000394243 ICAM5Q9UMF0 924 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 ERVH48-1M5A8F1 160 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 ARR3P36575 388 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 IER3P46695 156 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 MEOX1P50221 254 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 KISS1Q15726 138 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 OR1L3Q8NH93 324 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 CD207Q9UJ71 328 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 N4BP2Q86UW6 1770 aaPredicted RBP10.6□□□□□ -0.71
SYNPO-202ENST00000394243 MRPL54Q6P161 138 aaKnown RBP10.6□□□□□ -0.71
SYNPO-202ENST00000394243 CHAC2Q8WUX2 184 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 ADAT3Q96EY9 351 aaPredicted RBP10.6□□□□□ -0.71
SYNPO-202ENST00000394243 OR6C3Q9NZP0 311 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 ZNF785A8K8V0 405 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 EIF3GO75821 320 aaKnown RBP eCLIP10.59□□□□□ -0.71
SYNPO-202ENST00000394243 INSM1Q01101 510 aaPredicted RBP10.59□□□□□ -0.71
SYNPO-202ENST00000394243 PP6455Q8WZ26 134 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 PLPPR2Q96GM1 343 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 TTC3P53804 2025 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 SNURFLB1AK76 121 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 MBPP02686 304 aaPredicted RBP10.59□□□□□ -0.71
SYNPO-202ENST00000394243 LPAR6P43657 344 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 FOXO1Q12778 655 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 OR1C1Q15619 314 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 ATP6V1FQ16864 119 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 A0A1B0GX78 115 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 HLA-GP17693 338 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 IRS1P35568 1242 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 CEACAM6P40199 344 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 IFITM3Q01628 133 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 DUSP2Q05923 314 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 IL24Q13007 206 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 GAMTQ14353 236 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 TMEM52BQ4KMG9 183 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 HSPB8Q9UJY1 196 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 PPICP45877 212 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 OR3A4PP47883 348 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 P2RY1P47900 373 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 UQCRFS1P47985 274 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 LIAT1Q6ZQX7 453 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 OR10V1Q8NGI7 309 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 CNRIP1Q96F85 164 aaPredicted RBP10.59□□□□□ -0.71
SYNPO-202ENST00000394243 LSM11P83369 360 aaKnown RBP eCLIP10.59□□□□□ -0.71
SYNPO-202ENST00000394243 SRSF9Q13242 221 aaKnown RBP eCLIP10.59□□□□□ -0.71
SYNPO-202ENST00000394243 OR2D2Q9H210 308 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 MBNL1Q9NR56 388 aaKnown RBP10.59□□□□□ -0.71
SYNPO-202ENST00000394243 TCTAP57738 103 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 FZD2Q14332 565 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 ZNF77Q15935 545 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 TMEM215Q68D42 235 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 CLEC18BQ6UXF7 455 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 MSRB3Q8IXL7 192 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 OR8A1Q8NGG7 326 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 OR52L2PQ8NGH6 319 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 ST8SIA1Q92185 356 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 CNTD2Q9H8S5 307 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 TBC1D29Q9UFV1 150 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 ADAMTS5Q9UNA0 930 aa10.59□□□□□ -0.71
SYNPO-202ENST00000394243 CDC14BO60729 498 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 SCAND1P57086 179 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 FUT7Q11130 342 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 ZNF79Q15937 498 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 DCAF12Q5T6F0 453 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 D2HGDHQ8N465 521 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 OR2M3Q8NG83 312 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 PARP11Q9NR21 331 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 MYO5AQ9Y4I1 1855 aaKnown RBP10.58□□□□□ -0.72
SYNPO-202ENST00000394243 A0A1W2PR80 420 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 H3BMH7 237 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 CLDN15P56746 228 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 AGBL5Q8NDL9 886 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 NAT6Q93015 286 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 MOB3AQ96BX8 217 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 KTI12Q96EK9 354 aaPredicted RBP10.58□□□□□ -0.72
SYNPO-202ENST00000394243 P4HTMQ9NXG6 502 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 RBP4P02753 201 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 OPRK1P41145 380 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 CYB561P49447 251 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 RPS4XP62701 263 aaKnown RBP10.58□□□□□ -0.72
SYNPO-202ENST00000394243 SPATA45Q537H7 98 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 LEMD1Q68G75 181 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 FAHD2BQ6P2I3 314 aaPredicted RBP10.58□□□□□ -0.72
SYNPO-202ENST00000394243 C16orf82Q7Z2V1 217 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 RTN4RL1Q86UN2 441 aaPredicted RBP10.58□□□□□ -0.72
SYNPO-202ENST00000394243 CA13Q8N1Q1 262 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 TRMT61AQ96FX7 289 aaKnown RBP10.58□□□□□ -0.72
SYNPO-202ENST00000394243 FAHD2AQ96GK7 314 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 CA10Q9NS85 328 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 DOK5Q9P104 306 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 KCNAB3O43448 404 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 DEDDO75618 318 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 TRGC2P03986 189 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 OR1D5P58170 312 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 RNF165Q6ZSG1 346 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 PIK3IP1Q96FE7 263 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms