RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 OR5D13Q8NGL4 314 aa17.75■□□□□ 0.43
CCDC28B-201ENST00000373602 TRMT10AQ8TBZ6 339 aaKnown RBP17.75■□□□□ 0.43
CCDC28B-201ENST00000373602 RNF166Q96A37 237 aaPredicted RBP17.75■□□□□ 0.43
CCDC28B-201ENST00000373602 ADI1Q9BV57 179 aa17.75■□□□□ 0.43
CCDC28B-201ENST00000373602 GNG8Q9UK08 70 aa17.75■□□□□ 0.43
CCDC28B-201ENST00000373602 FAM230AA0A1W2PPH8 454 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 MEIOCA2RUB1 952 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 H0YAE9 185 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 ENTPD6O75354 484 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 GATBO75879 557 aaKnown RBP17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 SAA4P35542 130 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 KIR3DL2P43630 455 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 CEBPDP49716 269 aaPredicted RBP17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 ALDH3A2P51648 485 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 SNRPGP62308 76 aaKnown RBP17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 ACSM1Q08AH1 577 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 TAF9Q16594 264 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 HCP5Q6MZN7 132 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 GDPGP1Q6ZNW5 385 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 BATF2Q8N1L9 274 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 WFDC12Q8WWY7 111 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 CHST5Q9GZS9 411 aa17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 SF3B6Q9Y3B4 125 aaKnown RBP17.74■□□□□ 0.43
CCDC28B-201ENST00000373602 J3QRE1 110 aa17.73■□□□□ 0.43
CCDC28B-201ENST00000373602 UBCP0CG48 685 aaKnown RBP17.73■□□□□ 0.43
CCDC28B-201ENST00000373602 RPL31P62899 125 aaKnown RBP17.73■□□□□ 0.43
CCDC28B-201ENST00000373602 OCLNQ16625 522 aa17.73■□□□□ 0.43
CCDC28B-201ENST00000373602 ZIK1Q3SY52 487 aaPredicted RBP17.73■□□□□ 0.43
CCDC28B-201ENST00000373602 MEDAGQ5VYS4 303 aa17.73■□□□□ 0.43
CCDC28B-201ENST00000373602 C10orf35Q96D05 121 aa17.73■□□□□ 0.43
CCDC28B-201ENST00000373602 RNFT2Q96EX2 444 aa17.73■□□□□ 0.43
CCDC28B-201ENST00000373602 OR14J1Q9UGF5 321 aa17.73■□□□□ 0.43
CCDC28B-201ENST00000373602 MGAM2Q2M2H8 2515 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 IGKV1-27A0A075B6S5 117 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 LOC107986453A0A1B0GWG9 222 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 PAHP00439 452 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 SERPINA3P01011 423 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 FUT6P51993 359 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 ACTC1P68032 377 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 ACTA1P68133 377 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 TMEM200BQ69YZ2 307 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 KCTD20Q7Z5Y7 419 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 RDH10Q8IZV5 341 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 FAM234AQ9H0X4 552 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 MTCH1Q9NZJ7 389 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 VPREB3Q9UKI3 123 aa17.72■□□□□ 0.43
CCDC28B-201ENST00000373602 A0A1W2PPH5 198 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 BTBD17A6NE02 478 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 TK1P04183 234 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 TMEM244Q5VVB8 128 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 C17orf107Q6ZR85 190 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 MKXQ8IYA7 352 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 CBR4Q8N4T8 237 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 C11orf42Q8N5U0 333 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 OR4M1Q8NGD0 313 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 OR2G2Q8NGZ5 317 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 LINC01006Q8NI28 216 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 CEP19Q96LK0 163 aa17.71■□□□□ 0.43
CCDC28B-201ENST00000373602 DAPL1A0PJW8 107 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 F8VVB4 439 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 F8VWA3 439 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 K7N7A8 449 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 ANGPTL7O43827 346 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 SRSF4Q08170 494 aaKnown RBP17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 CNN3Q15417 329 aaKnown RBP17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 MIDNQ504T8 468 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 FDX2Q6P4F2 183 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 C10orf67Q8IYJ2 551 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 ZSCAN4Q8NAM6 433 aaPredicted RBP17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 BEND2Q8NDZ0 799 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 OR5R1Q8NH85 324 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 PP6455Q8WZ26 134 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 BORCS8Q96FH0 119 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 MBOAT4Q96T53 435 aa17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 EXOGQ9Y2C4 368 aaKnown RBP17.7■□□□□ 0.42
CCDC28B-201ENST00000373602 SNTNA6NMZ2 147 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 SLC16A6O15403 523 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 ISG15P05161 165 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 GABRB1P18505 474 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 OR12D2P58182 307 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 COL10A1Q03692 680 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 Q6ZSV7 163 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 ACBD7Q8N6N7 88 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 DNAAF1Q8NEP3 725 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 C17orf50Q8WW18 174 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 SLAMF9Q96A28 289 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 ADAT3Q96EY9 351 aaPredicted RBP17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 AJUBAQ96IF1 538 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 HEXA-AS1Q9H8Q6 139 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 FRRS1LQ9P0K9 344 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 AASSQ9UDR5 926 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 RNF114Q9Y508 228 aa17.69■□□□□ 0.42
CCDC28B-201ENST00000373602 ZNF737O75373 536 aa17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 CHRM2P08172 466 aa17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 CCL3L1P16619 93 aa17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 CCR9P51686 369 aa17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 NANOS3P60323 173 aaKnown RBP17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 ZNF273Q14593 569 aa17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 DHRS7BQ6IAN0 325 aaPredicted RBP17.68■□□□□ 0.42
CCDC28B-201ENST00000373602 TREML4Q6UXN2 200 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms