RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 RPS2P15880 293 aaKnown RBP16.8■□□□□ 0.28
COL9A3-201ENST00000343916 OPRM1P35372 400 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 FAM3AP98173 230 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 CNN3Q15417 329 aaKnown RBP16.8■□□□□ 0.28
COL9A3-201ENST00000343916 KRTAP27-1Q3LI81 207 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 ZNF528Q3MIS6 628 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 PIGYQ3MUY2 71 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 RIPPLY2Q5TAB7 128 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 BATF2Q8N1L9 274 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 CPEB3Q8NE35 698 aaKnown RBP16.8■□□□□ 0.28
COL9A3-201ENST00000343916 CCDC54Q8NEL0 328 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 OR2M7Q8NG81 312 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 RRNAD1Q96FB5 475 aaKnown RBP16.8■□□□□ 0.28
COL9A3-201ENST00000343916 NARS2Q96I59 477 aaKnown RBP16.8■□□□□ 0.28
COL9A3-201ENST00000343916 OR10C1Q96KK4 312 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 NMES1Q9C002 83 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 NOSIPQ9Y314 301 aaKnown RBP16.8■□□□□ 0.28
COL9A3-201ENST00000343916 FAM166BA8MTA8 275 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 ZNF883P0CG24 379 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 PDCD1Q15116 288 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 PABPC1L2AQ5JQF8 200 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 SCGB3A2Q96PL1 93 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 ZNF2Q9BSG1 426 aaPredicted RBP16.8■□□□□ 0.28
COL9A3-201ENST00000343916 DDA1Q9BW61 102 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 ZNF703Q9H7S9 590 aaPredicted RBP16.8■□□□□ 0.28
COL9A3-201ENST00000343916 FRYQ5TBA9 3013 aa16.8■□□□□ 0.28
COL9A3-201ENST00000343916 A0A096LPE4 126 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 hCG_38984A0A1B0GV85 526 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 A0A1W2PPZ6 126 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 EDN3P14138 238 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 ABHD17BQ5VST6 288 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 LINC00696Q6ZRV3 163 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 BPIFCQ8NFQ6 507 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 PIGCQ92535 297 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 METTL8Q9H825 291 aaKnown RBP16.79■□□□□ 0.28
COL9A3-201ENST00000343916 BARX1Q9HBU1 254 aaPredicted RBP16.79■□□□□ 0.28
COL9A3-201ENST00000343916 ACKR4Q9NPB9 350 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 AK3Q9UIJ7 227 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 MRPS18CQ9Y3D5 142 aaKnown RBP16.79■□□□□ 0.28
COL9A3-201ENST00000343916 FAM221AA4D161 298 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 GEMIN2O14893 280 aaKnown RBP16.79■□□□□ 0.28
COL9A3-201ENST00000343916 MRPL33O75394 65 aaKnown RBP16.79■□□□□ 0.28
COL9A3-201ENST00000343916 PRKACAP17612 351 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 ITGA3P26006 1051 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 MAGEA5P43359 124 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 SLC7A10Q9NS82 523 aa16.79■□□□□ 0.28
COL9A3-201ENST00000343916 SFTPBP07988 381 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 HOXB5P09067 269 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 MMP7P09237 267 aaPredicted RBP16.78■□□□□ 0.28
COL9A3-201ENST00000343916 SP9P0CG40 484 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 CCL2P13500 99 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 FOXG1P55316 489 aaPredicted RBP16.78■□□□□ 0.28
COL9A3-201ENST00000343916 ZNF169Q14929 603 aaPredicted RBP16.78■□□□□ 0.28
COL9A3-201ENST00000343916 DOCK7Q96N67 2140 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 SULT4A1Q9BR01 284 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 SLC6A15Q9H2J7 730 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 LIME1Q9H400 295 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 RAB18Q9NP72 206 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 PCP4L1A6NKN8 68 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 CCNOP22674 350 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 LHX2P50458 406 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 PCBD1P61457 104 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 ARL6IP1Q15041 203 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 TMEM42Q69YG0 159 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 TUSC5Q8IXB3 177 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 FAM173AQ9BQD7 235 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 OR5AC2Q9NZP5 309 aa16.78■□□□□ 0.28
COL9A3-201ENST00000343916 MSGN1A6NI15 193 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 PTGER4P35408 488 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 OR1C1Q15619 314 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 PLCXD3Q63HM9 321 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 LHFPL2Q6ZUX7 228 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 MOB3CQ70IA8 216 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 CALHM2Q9HA72 323 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 PCDHB16Q9NRJ7 776 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 GSKIPQ9P0R6 139 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 ANXA10Q9UJ72 324 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 LOC400499M0QZD8 3231 aa16.77■□□□□ 0.28
COL9A3-201ENST00000343916 FARS2O95363 451 aaKnown RBP16.77■□□□□ 0.27
COL9A3-201ENST00000343916 CD59P13987 128 aa16.77■□□□□ 0.27
COL9A3-201ENST00000343916 CYCSP99999 105 aaKnown RBP16.77■□□□□ 0.27
COL9A3-201ENST00000343916 SNTB1Q13884 538 aaKnown RBP16.77■□□□□ 0.27
COL9A3-201ENST00000343916 DCAF10Q5QP82 559 aa16.77■□□□□ 0.27
COL9A3-201ENST00000343916 FBXL14Q8N1E6 418 aa16.77■□□□□ 0.27
COL9A3-201ENST00000343916 CLRN3Q8NCR9 226 aa16.77■□□□□ 0.27
COL9A3-201ENST00000343916 OR10AD1Q8NGE0 317 aa16.77■□□□□ 0.27
COL9A3-201ENST00000343916 OR51F2Q8NH61 342 aa16.77■□□□□ 0.27
COL9A3-201ENST00000343916 CMSS1Q9BQ75 279 aaKnown RBP16.77■□□□□ 0.27
COL9A3-201ENST00000343916 C14orf166Q9Y224 244 aaKnown RBP16.77■□□□□ 0.27
COL9A3-201ENST00000343916 A0A1B0GW55 424 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 DUX4L2P0CJ85 424 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 DUX4L3P0CJ86 424 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 DUX4L4P0CJ87 422 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 DUX4L5P0CJ88 424 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 DUX4L6P0CJ89 424 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 DUX4L7P0CJ90 424 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 CLDN18P56856 261 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 FNDC9Q8TBE3 224 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 DUX4Q9UBX2 424 aa16.76■□□□□ 0.27
COL9A3-201ENST00000343916 ASPMQ8IZT6 3477 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms