RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 MTCP1P56278 107 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 SCRN3Q0VDG4 424 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 CEACAM16Q2WEN9 425 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 C6orf201Q7Z4U5 140 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 TMEM17Q86X19 198 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 FGFBP3Q8TAT2 258 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 PRRG4Q9BZD6 226 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 WNT5BQ9H1J7 359 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 PPA2Q9H2U2 334 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 CHMP1AQ9HD42 196 aaPredicted RBP13.03□□□□□ -0.32
TPM3-208ENST00000341485 RASL12Q9NYN1 266 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 SESN1Q9Y6P5 492 aa13.03□□□□□ -0.32
TPM3-208ENST00000341485 IGKV1-27A0A075B6S5 117 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 IGKV1D-8A0A087WSZ0 117 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 FIGNL2A6NMB9 653 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 LGALS8O00214 317 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 LCATP04180 440 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 TMEM225BP0DP42 221 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 PSMB6P28072 239 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 HTR5AP47898 357 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 PSG4Q00888 419 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 ANKRD55Q3KP44 614 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 RNFT1Q5M7Z0 435 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 HSD17B13Q7Z5P4 300 aaPredicted RBP13.02□□□□□ -0.33
TPM3-208ENST00000341485 BVESQ8NE79 360 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 OR5AP2Q8NGF4 316 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 SPSB1Q96BD6 273 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 SCGB3A2Q96PL1 93 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 FOXB1Q99853 325 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 ZNF471Q9BX82 626 aaPredicted RBP13.02□□□□□ -0.33
TPM3-208ENST00000341485 NMES1Q9C002 83 aa13.02□□□□□ -0.33
TPM3-208ENST00000341485 A0A0B4J2A0 478 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 B8ZZF3 427 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 MSTNO14793 375 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 KCNAB3O43448 404 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 ANGPTL7O43827 346 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 ADAP1O75689 374 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 GLRA1P23415 457 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 NUP62P37198 522 aaPredicted RBP13.01□□□□□ -0.33
TPM3-208ENST00000341485 OVCH2Q7RTZ1 564 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 GALNT11Q8NCW6 608 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 PXT1Q8NFP0 134 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 ABHD3Q8WU67 409 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 MICU1Q9BPX6 476 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 HDHD3Q9BSH5 251 aaPredicted RBP13.01□□□□□ -0.33
TPM3-208ENST00000341485 OR2H1Q9GZK4 316 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 ZDHHC11Q9H8X9 412 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 GPR35Q9HC97 309 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 ZNF701Q9NV72 531 aaPredicted RBP13.01□□□□□ -0.33
TPM3-208ENST00000341485 SHPKQ9UHJ6 478 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 MSRB2Q9Y3D2 182 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 FAM230AA0A1W2PPH8 454 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 SPRY1O43609 319 aaPredicted RBP13.01□□□□□ -0.33
TPM3-208ENST00000341485 RPS2P15880 293 aaKnown RBP13.01□□□□□ -0.33
TPM3-208ENST00000341485 ARL6IP1Q15041 203 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 PPA1Q15181 289 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 C3AR1Q16581 482 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 CHRFAM7AQ494W8 412 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 NKAPLQ5M9Q1 402 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 EMG1Q92979 244 aaKnown RBP13.01□□□□□ -0.33
TPM3-208ENST00000341485 RNF126Q9BV68 326 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 METTL9Q9H1A3 318 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 RAB18Q9NP72 206 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 COQ3Q9NZJ6 369 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 ZNF581Q9P0T4 197 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 GPR160Q9UJ42 338 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 TIMM10BQ9Y5J6 103 aa13.01□□□□□ -0.33
TPM3-208ENST00000341485 MPTX1A8MV57 137 aa13□□□□□ -0.33
TPM3-208ENST00000341485 H0YIZ8 118 aa13□□□□□ -0.33
TPM3-208ENST00000341485 SERPINA5P05154 406 aa13□□□□□ -0.33
TPM3-208ENST00000341485 RIPPLY2Q5TAB7 128 aa13□□□□□ -0.33
TPM3-208ENST00000341485 RTL6Q6ICC9 239 aa13□□□□□ -0.33
TPM3-208ENST00000341485 SLC38A6Q8IZM9 456 aa13□□□□□ -0.33
TPM3-208ENST00000341485 EIF4E3Q8N5X7 224 aaKnown RBP13□□□□□ -0.33
TPM3-208ENST00000341485 INO80EQ8NBZ0 244 aaPredicted RBP13□□□□□ -0.33
TPM3-208ENST00000341485 PLEKHJ1Q9NW61 149 aa13□□□□□ -0.33
TPM3-208ENST00000341485 TRBV6-7A0A0A0MS04 114 aa13□□□□□ -0.33
TPM3-208ENST00000341485 PLATP00750 562 aa13□□□□□ -0.33
TPM3-208ENST00000341485 PRKACBP22694 351 aa13□□□□□ -0.33
TPM3-208ENST00000341485 CYCSP99999 105 aaKnown RBP13□□□□□ -0.33
TPM3-208ENST00000341485 CNN3Q15417 329 aaKnown RBP13□□□□□ -0.33
TPM3-208ENST00000341485 TUSC1Q2TAM9 212 aa13□□□□□ -0.33
TPM3-208ENST00000341485 NSUN5P2Q63ZY6 315 aa13□□□□□ -0.33
TPM3-208ENST00000341485 TMEM42Q69YG0 159 aa13□□□□□ -0.33
TPM3-208ENST00000341485 PLXDC2Q6UX71 529 aa13□□□□□ -0.33
TPM3-208ENST00000341485 MOB3CQ70IA8 216 aa13□□□□□ -0.33
TPM3-208ENST00000341485 SKA3Q8IX90 412 aa13□□□□□ -0.33
TPM3-208ENST00000341485 DCUN1D4Q92564 292 aa13□□□□□ -0.33
TPM3-208ENST00000341485 BARX1Q9HBU1 254 aaPredicted RBP13□□□□□ -0.33
TPM3-208ENST00000341485 SPRR3Q9UBC9 169 aa13□□□□□ -0.33
TPM3-208ENST00000341485 WASF3Q9UPY6 502 aa13□□□□□ -0.33
TPM3-208ENST00000341485 NOSIPQ9Y314 301 aaKnown RBP13□□□□□ -0.33
TPM3-208ENST00000341485 KRBOX1C9JBD0 128 aa12.99□□□□□ -0.33
TPM3-208ENST00000341485 F5H0A9 414 aaPredicted RBP12.99□□□□□ -0.33
TPM3-208ENST00000341485 PGAM2P15259 253 aa12.99□□□□□ -0.33
TPM3-208ENST00000341485 ZNF169Q14929 603 aaPredicted RBP12.99□□□□□ -0.33
TPM3-208ENST00000341485 RSU1Q15404 277 aa12.99□□□□□ -0.33
TPM3-208ENST00000341485 RPUSD3Q6P087 351 aaKnown RBP12.99□□□□□ -0.33
TPM3-208ENST00000341485 MCEMP1Q8IX19 187 aa12.99□□□□□ -0.33
TPM3-208ENST00000341485 SPACA3Q8IXA5 215 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms