RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 DUX4L3P0CJ86 424 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 DUX4L4P0CJ87 422 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 DUX4L5P0CJ88 424 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 DUX4L6P0CJ89 424 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 DUX4L7P0CJ90 424 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 GABRA2P47869 451 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 CR1LQ2VPA4 569 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 WDR25Q64LD2 544 aaPredicted RBP13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 ZNF529Q6P280 563 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 DUX4L9Q6RFH8 374 aaPredicted RBP13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 ZNF841Q6ZN19 808 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 ZNF367Q7RTV3 350 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 MKXQ8IYA7 352 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 SVOPQ8N4V2 548 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 FAM216BQ8N7L0 139 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 ISYNA1Q9NPH2 558 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 ACOT13Q9NPJ3 140 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 MTCH1Q9NZJ7 389 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 CKLFQ9UBR5 152 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 DUX4Q9UBX2 424 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 TRBV5-7A0A0A0MS05 114 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 A0A0G2JMP0 313 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 A0A0X1KG70 313 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 DVL1O14640 695 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 ANGPTL7O43827 346 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 MRPS14O60783 128 aaKnown RBP13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 PSG2P11465 335 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 NF1P21359 2839 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 PCMT1P22061 227 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 NPY4RP50391 375 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 ERVK11-1P61568 191 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 MLLT11Q13015 90 aaPredicted RBP13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 PDZK1IP1Q13113 114 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 IKZF1Q13422 519 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 KISS1Q15726 138 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 DCAF12L2Q5VW00 463 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 FAHD2BQ6P2I3 314 aaPredicted RBP13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 IL17RELQ6ZVW7 336 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 SLC36A1Q7Z2H8 476 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 SATL1Q86VE3 508 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 MS4A15Q8N5U1 240 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 OR4M2Q8NGB6 313 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 ANGPTL6Q8NI99 470 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 CPNE2Q96FN4 548 aaPredicted RBP13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 FAHD2AQ96GK7 314 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 DERL3Q96Q80 235 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 GPER1Q99527 375 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 MGLLQ99685 303 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 SMURF1Q9HCE7 757 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 TMEM160Q9NX00 188 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 KAAG1Q9UBP8 84 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 ANK3Q12955 4377 aaKnown RBP13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 NIPBLQ6KC79 2804 aaeCLIP13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 IGKV1D-17A0A075B6S4 117 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 F8VVB4 439 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 F8VWA3 439 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 TRAPPC2LH3BP13 241 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 ACAA1P09110 424 aaPredicted RBP13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 AMY2BP19961 511 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 MAPK3P27361 379 aaPredicted RBP13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 BDKRB2P30411 391 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 EMX1Q04741 257 aaPredicted RBP13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 GPR50Q13585 617 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 TPBGQ13641 420 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 INSL4Q14641 139 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 FAM120AOSQ5T036 256 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 ATPAF1Q5TC12 328 aaPredicted RBP13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 CRIP3Q6Q6R5 217 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 SPARTQ8N0X7 666 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 OR52N4Q8NGI2 321 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 ST8SIA4Q92187 359 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 THRSPQ92748 146 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 EMG1Q92979 244 aaKnown RBP13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 GAFA1Q96PS6 74 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 SHARPINQ9H0F6 387 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 DNTTIP1Q9H147 329 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 HES4Q9HCC6 221 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 NOX4Q9NPH5 578 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 MMP26Q9NRE1 261 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 OR14J1Q9UGF5 321 aa13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 POLR3KQ9Y2Y1 108 aaPredicted RBP13.22□□□□□ -0.29
CCDC28A-201ENST00000332797 TRAV8-7A0A075B6U6 113 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 RFPL4AA6NLU0 287 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 RFPL4AL1F8VTS6 287 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 NDUFB3O43676 98 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 TMEM225BP0DP42 221 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 SELLP14151 372 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 IGFBP3P17936 291 aaPredicted RBP13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 FSTP19883 344 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 BCL3P20749 454 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 HNF1AP20823 631 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 TGFBR2P37173 567 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 NPBWR2P48146 333 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 CEBPDP49716 269 aaPredicted RBP13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 RPS25P62851 125 aaKnown RBP13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 IL13RA1P78552 427 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 ACSM3Q53FZ2 586 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 DDI2Q5TDH0 399 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 ZNF788Q6ZQV5 615 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 Q8IYB0 196 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms