RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 SFT2D2O95562 160 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 NKAIN2Q5VXU1 208 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 MED25Q71SY5 747 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 MRGPREQ86SM8 312 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 SLC16A11Q8NCK7 471 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 TNFRSF12AQ9NP84 129 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 RASL12Q9NYN1 266 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 RARRES3Q9UL19 164 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 PCNX1Q96RV3 2341 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 DSCR3O14972 297 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 GALR3O60755 368 aaPredicted RBP10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 EXT1Q16394 746 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 SIRT5Q9NXA8 310 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 PDCD11Q14690 1871 aaKnown RBP10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 GJC3Q8NFK1 279 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 MOGAT1Q96PD6 335 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 SBK3P0C264 359 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 ANKRD34CP0C6C1 535 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 S100A4P26447 101 aaKnown RBP10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 NTNG2Q96CW9 530 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 ANAPC13Q9BS18 74 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 PBOV1Q9GZY1 135 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 MRPL33O75394 65 aaKnown RBP10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 CXCL2P19875 107 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 SAPCD1Q5SSQ6 148 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 SPHK2Q9NRA0 654 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 TMPRSS11DO60235 418 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 RHOBP62745 196 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 TMEM136Q6ZRR5 245 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 CISD2Q8N5K1 135 aaKnown RBP10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 TTC9BQ8N6N2 239 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 ARHGAP5-AS1Q96IT6 56 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 SLC25A19Q9HC21 320 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 STARD10Q9Y365 291 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 V9GYH0 126 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 PQLC2LA1A4F0 135 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 NKX6-3A6NJ46 265 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 LPAR4Q99677 370 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 SPRY1O43609 319 aaPredicted RBP10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 MMP16P51512 607 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 ERHP84090 104 aaKnown RBP10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 NKG7Q16617 165 aa10.57□□□□□ -0.72
SHROOM3-201ENST00000296043 PLXNB1O43157 2135 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 PNLIPRP3Q17RR3 467 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 NRIP2Q9BQI9 281 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 BARHL1Q9BZE3 327 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 STRADBQ9C0K7 418 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 FGF20Q9NP95 211 aaPredicted RBP10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 CACNG5Q9UF02 275 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 TBX21Q9UL17 535 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 R4GMQ9 66 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 DDX60Q8IY21 1712 aaKnown RBP10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 LSM11P83369 360 aaKnown RBP eCLIP10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 RAB7BQ96AH8 199 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 NAA60Q9H7X0 242 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 TRAV39A0A0B4J263 110 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 OR5AC1P0C628 307 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 ACRP10323 421 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 C20orf196Q8IYI0 205 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 EMC6Q9BV81 110 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 CA10Q9NS85 328 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 TNRC6AQ8NDV7 1962 aaKnown RBP10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 ABHD1Q96SE0 405 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 PAAF1Q9BRP4 392 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 TMEM204Q9BSN7 226 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 APOBEC3BQ9UH17 382 aaKnown RBP10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 CLDN16Q9Y5I7 305 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 PPP2CBP62714 309 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 PRDX4Q13162 271 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 TSPO2Q5TGU0 170 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 SPNS2Q8IVW8 549 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 ZNF595Q8IYB9 648 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 A6NCN8 305 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 ARRDC5A6NEK1 342 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 P2RY2P41231 377 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 CLEC18BQ6UXF7 455 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 SH2D1BO14796 132 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 SRSF10O75494 262 aaKnown RBP10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 IFITM2Q01629 132 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 IL24Q13007 206 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 ZNF841Q6ZN19 808 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 SLCO4C1Q6ZQN7 724 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 OR2C3Q8N628 320 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 HIST1H4GQ99525 98 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 CD207Q9UJ71 328 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 MRPS17Q9Y2R5 130 aaKnown RBP10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 SLC25A17O43808 307 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 RAG2P55895 527 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 DCAF7P61962 342 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 WDR25Q64LD2 544 aaPredicted RBP10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 NIT1Q86X76 327 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 CHAC2Q8WUX2 184 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 AAMDCQ9H7C9 122 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 CALHM2Q9HA72 323 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 CLEC5AQ9NY25 188 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 RPL27P61353 136 aaKnown RBP10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 SPPL3Q8TCT6 385 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 LRRC3BQ96PB8 259 aa10.56□□□□□ -0.72
SHROOM3-201ENST00000296043 SP1P08047 785 aa10.55□□□□□ -0.72
SHROOM3-201ENST00000296043 PGA4P0DJD7 388 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms