RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 HEXBP07686 556 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 HOXB5P09067 269 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 H2BFMP0C1H6 154 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 HOXA5P20719 270 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 RPL12P30050 165 aaKnown RBP9.05□□□□□ -0.96
UPF3B-201ENST00000276201 DAP3P51398 398 aaKnown RBP9.05□□□□□ -0.96
UPF3B-201ENST00000276201 NNATQ16517 81 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 DCAF10Q5QP82 559 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 AADACL3Q5VUY0 350 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 LRRC18Q8N456 261 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 OR13G1Q8NGZ3 307 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 SSC4DQ8WTU2 575 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 SLC25A43Q8WUT9 341 aaPredicted RBP9.05□□□□□ -0.96
UPF3B-201ENST00000276201 ROBO4Q8WZ75 1007 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 RAB3CQ96E17 227 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 AKR1E2Q96JD6 320 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 C5orf34Q96MH7 638 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 KCNK17Q96T54 332 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 GAL3ST1Q99999 423 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 LANCL2Q9NS86 450 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 AMDHD2Q9Y303 409 aa9.05□□□□□ -0.96
UPF3B-201ENST00000276201 CACNA1CQ13936 2221 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 SPTA1P02549 2419 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 SMG1Q96Q15 3661 aaKnown RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 LOC100509620A0A075B734 347 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 A0A1W2PPE3 182 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 TSPAN2O60636 221 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 LMX1BO60663 402 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 CDC14BO60729 498 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 CEACAM4O75871 244 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 CCL1P22362 96 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 CCL11P51671 97 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 RRADP55042 308 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 GUK1Q16774 197 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 GRINAQ7Z429 371 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 DCXRQ7Z4W1 244 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 WDSUB1Q8N9V3 476 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 OR51F2Q8NH61 342 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 SECTM1Q8WVN6 248 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 ABHD17AQ96GS6 310 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 S100A13Q99584 98 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 NKX3-1Q99801 234 aaPredicted RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 PAPOLGQ9BWT3 736 aaKnown RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 BCL2L14Q9BZR8 327 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 NXF5Q9H1B4 397 aaKnown RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 METTL8Q9H825 291 aaKnown RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 OR2S2Q9NQN1 319 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 LUZP4Q9P127 313 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 TMED3Q9Y3Q3 217 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 K7EM74 188 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 K7EPK0 472 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 SYT7O43581 403 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 TSPAN15O95858 294 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 IGKV3-11P04433 115 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 SERPINA5P05154 406 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 OR8U9P0C7N5 309 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 FOSL1P15407 271 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 FCGR2CP31995 323 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 ZNF93P35789 620 aaPredicted RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 EBPQ15125 230 aaKnown RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 SLC9A3R2Q15599 337 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 PLAC9Q5JTB6 97 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 GPR157Q5UAW9 335 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 MARCH3Q86UD3 253 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 FAM71E2Q8N5Q1 922 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 BHLHE23Q8NDY6 225 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 OR8U1Q8NH10 309 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 SLC22A8Q8TCC7 542 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 PTPMT1Q8WUK0 201 aaPredicted RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 PHF3Q92576 2039 aaKnown RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 ADAT3Q96EY9 351 aaPredicted RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 FER1L6-AS2Q96M78 137 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 URM1Q9BTM9 101 aaKnown RBP9.04□□□□□ -0.96
UPF3B-201ENST00000276201 PBDC1Q9BVG4 233 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 PBOV1Q9GZY1 135 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 FBXL17Q9UF56 701 aa9.04□□□□□ -0.96
UPF3B-201ENST00000276201 BOD1L1Q8NFC6 3051 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 A0A087WWC5 75 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 LOC102723996A0A087X1L8 192 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 C17orf105B2RV13 164 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 MKRN2OSH3BPM6 223 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 AHSA1O95433 338 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 IFNA2P01563 188 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 CTSDP07339 412 aaPredicted RBP9.03□□□□□ -0.96
UPF3B-201ENST00000276201 CYC1P08574 325 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 SFTPCP11686 197 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 COX6A1P12074 109 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 NPY4RP50391 375 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 TMEM50BP56557 158 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 RAB2AP61019 212 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 ZNF239Q16600 458 aaKnown RBP9.03□□□□□ -0.96
UPF3B-201ENST00000276201 C1QL3Q5VWW1 255 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 KLHL24Q6TFL4 600 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 LANCL3Q6ZV70 420 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.03□□□□□ -0.96
UPF3B-201ENST00000276201 OR5AS1Q8N127 324 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 SLC35B3Q9H1N7 401 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 TP53TG5Q9Y2B4 290 aa9.03□□□□□ -0.96
UPF3B-201ENST00000276201 MRPS28Q9Y2Q9 187 aaKnown RBP9.03□□□□□ -0.96
UPF3B-201ENST00000276201 COL6A6A6NMZ7 2263 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms