RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 LHFPL2Q6ZUX7 228 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 FAM219AQ8IW50 185 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 OR4A4PQ8NGN8 299 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 OR14L1PQ8NHC6 308 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 SMIM8Q96KF7 97 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 CMSS1Q9BQ75 279 aaKnown RBP14.29□□□□□ -0.12
HOXD3-201ENST00000249440 TREM1Q9NP99 234 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 AK3Q9UIJ7 227 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 ZNF391Q9UJN7 358 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 CARHSP1Q9Y2V2 147 aaKnown RBP14.29□□□□□ -0.12
HOXD3-201ENST00000249440 KCNIP3Q9Y2W7 256 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 CCDC187A0A096LP49 1063 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 ZNF850A8MQ14 1090 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 K7EPK0 472 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 P04436 131 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 ZNF708P17019 499 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 DTYMKP23919 212 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 B3GALT5-AS1P59052 145 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 SRSF3P84103 164 aaKnown RBP14.29□□□□□ -0.12
HOXD3-201ENST00000249440 GUCA2BQ16661 112 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 MST1LQ2TV78 715 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 RPL7L1Q6DKI1 246 aaKnown RBP14.29□□□□□ -0.12
HOXD3-201ENST00000249440 DHRS11Q6UWP2 260 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 FAM71E2Q8N5Q1 922 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 IER2Q9BTL4 223 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 UQCC1Q9NVA1 299 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 TUBD1Q9UJT1 453 aa14.29□□□□□ -0.12
HOXD3-201ENST00000249440 IGKV1-27A0A075B6S5 117 aa14.28□□□□□ -0.12
HOXD3-201ENST00000249440 RPL12P30050 165 aaKnown RBP14.28□□□□□ -0.12
HOXD3-201ENST00000249440 YRDCQ86U90 279 aaKnown RBP14.28□□□□□ -0.12
HOXD3-201ENST00000249440 SPAG16Q8N0X2 631 aa14.28□□□□□ -0.12
HOXD3-201ENST00000249440 SEC11CQ9BY50 192 aa14.28□□□□□ -0.12
HOXD3-201ENST00000249440 HRH4Q9H3N8 390 aa14.28□□□□□ -0.12
HOXD3-201ENST00000249440 RYDENQ9NUL5 291 aaKnown RBP14.28□□□□□ -0.12
HOXD3-201ENST00000249440 CUL9Q8IWT3 2517 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 DEDDO75618 318 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 CST4P01036 141 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 NRASP01111 189 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 ZNF32P17041 273 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 RRADP55042 308 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 HGFACQ04756 655 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 H3F3CQ6NXT2 135 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 ASCL4Q6XD76 172 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 AAED1Q7RTV5 226 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 LDLRAD3Q86YD5 345 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 TLNRD1Q9H1K6 362 aa14.27□□□□□ -0.12
HOXD3-201ENST00000249440 OR6C6A6NF89 314 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 ZNF716A6NP11 495 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 JTBO76095 146 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 SNAPINO95295 136 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 FCGR3AP08637 254 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 B4GALT1P15291 398 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 IL32P24001 234 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 NTF4P34130 210 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 HTR5AP47898 357 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 PIGPP57054 158 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 GGNBP1Q5YKI7 109 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 HAGHLQ6PII5 290 aaPredicted RBP14.27□□□□□ -0.13
HOXD3-201ENST00000249440 GGNQ86UU5 652 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 ALKBH3Q96Q83 286 aaPredicted RBP14.27□□□□□ -0.13
HOXD3-201ENST00000249440 RGCCQ9H4X1 137 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 RHOFQ9HBH0 211 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 TIMM10BQ9Y5J6 103 aa14.27□□□□□ -0.13
HOXD3-201ENST00000249440 MASP2O00187 686 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 MSTNO14793 375 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 LRP3O75074 770 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 IGHEP01854 428 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 H2AFB1P0C5Y9 115 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 CHATP28329 748 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 OPRM1P35372 400 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 CAV2P51636 162 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 ZNF528Q3MIS6 628 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 TMEM42Q69YG0 159 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 AKR7LQ8NHP1 331 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 PRRX2Q99811 253 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 FOXB1Q99853 325 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 SULT4A1Q9BR01 284 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 DMXL1Q9Y485 3027 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 H7C2Y5 167 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 MED6O75586 246 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 GAPDHP04406 335 aaKnown RBP14.26□□□□□ -0.13
HOXD3-201ENST00000249440 ZNF728P0DKX0 622 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 PSG4Q00888 419 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 FLI1Q01543 452 aaPredicted RBP14.26□□□□□ -0.13
HOXD3-201ENST00000249440 SPEM2Q0P670 501 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 LPAL2Q16609 132 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 KRTAP27-1Q3LI81 207 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 ABCA11PQ4W5N1 156 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 OR2A2Q6IF42 318 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 OSR2Q8N2R0 312 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 TOMM40LQ969M1 308 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 LIME1Q9H400 295 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 TMEM231Q9H6L2 316 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 NDRG3Q9UGV2 375 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 NCKAP5O14513 1909 aa14.26□□□□□ -0.13
HOXD3-201ENST00000249440 TERTO14746 1132 aaKnown RBP14.25□□□□□ -0.13
HOXD3-201ENST00000249440 GEMIN2O14893 280 aaKnown RBP14.25□□□□□ -0.13
HOXD3-201ENST00000249440 CXCL13O43927 109 aa14.25□□□□□ -0.13
HOXD3-201ENST00000249440 PATE4P0C8F1 98 aa14.25□□□□□ -0.13
HOXD3-201ENST00000249440 ICAM2P13598 275 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms