RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PARP11Q9NR21 331 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 CACNA1EQ15878 2313 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 EML6Q6ZMW3 1958 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 ZNF728P0DKX0 622 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 DTYMKP23919 212 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 F2RL1P55085 397 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 TMEM33P57088 247 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 SWI5Q1ZZU3 235 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 M1APQ8TC57 530 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 BORCS8Q96FH0 119 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 WDR87Q6ZQQ6 2873 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 C9J4A7 227 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 MSTNO14793 375 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 SYNGR3O43761 229 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 CBR3O75828 277 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 LCATP04180 440 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 FCGR3AP08637 254 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 RBP2P50120 134 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 HLA-BQ31612 363 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 FAM76BQ5HYJ3 339 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 ZNF774Q6NX45 483 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 BTNL8Q6UX41 500 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 GPR137CQ8N3F9 429 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 OR1F12Q8NHA8 337 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 CLDN23Q96B33 292 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 PLEKHA2Q9HB19 425 aa16.3■□□□□ 0.2
CPSF3-201ENST00000238112 MYO7BQ6PIF6 2116 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 RFC3P40938 356 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 Q6ZRG5 221 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 LHFPL2Q6ZUX7 228 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 RPS19BP1Q86WX3 136 aaKnown RBP16.29■□□□□ 0.2
CPSF3-201ENST00000238112 IFI44Q8TCB0 444 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 SF3B5Q9BWJ5 86 aaKnown RBP16.29■□□□□ 0.2
CPSF3-201ENST00000238112 NAA60Q9H7X0 242 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 CRLF2Q9HC73 371 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 HS3ST3B1Q9Y662 390 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 RTTNQ86VV8 2226 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 IGKV1-27A0A075B6S5 117 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 CD80P33681 288 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 SP6Q3SY56 376 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 DHRS11Q6UWP2 260 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 SULT4A1Q9BR01 284 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 LIME1Q9H400 295 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 SH2D2AQ9NP31 389 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 ZNF581Q9P0T4 197 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 AMDHD2Q9Y303 409 aa16.29■□□□□ 0.2
CPSF3-201ENST00000238112 KLF2Q9Y5W3 355 aaPredicted RBP16.29■□□□□ 0.2
CPSF3-201ENST00000238112 CST2P09228 141 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 RAB13P51153 203 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 PRSS12P56730 875 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 FXYD4P59646 89 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 PDZK1IP1Q13113 114 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 NAXEQ8NCW5 288 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 RTN4IP1Q8WWV3 396 aaPredicted RBP16.28■□□□□ 0.2
CPSF3-201ENST00000238112 POMT1Q9Y6A1 747 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 E5RGE8 158 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 NRASP01111 189 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 CD5P06127 495 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 OR5AC1P0C628 307 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 NFYBP25208 207 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 CHATP28329 748 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 RAC3P60763 192 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 FAM3AP98173 230 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 HGFACQ04756 655 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 NSG2Q9Y328 171 aa16.28■□□□□ 0.2
CPSF3-201ENST00000238112 CCDC187A0A096LP49 1063 aa16.27■□□□□ 0.2
CPSF3-201ENST00000238112 NSG1A0A0A6YYJ2 146 aa16.27■□□□□ 0.2
CPSF3-201ENST00000238112 KLF7O75840 302 aaPredicted RBP16.27■□□□□ 0.2
CPSF3-201ENST00000238112 ZNF205O95201 554 aa16.27■□□□□ 0.2
CPSF3-201ENST00000238112 HEXAP06865 529 aa16.27■□□□□ 0.2
CPSF3-201ENST00000238112 AKR1D1P51857 326 aa16.27■□□□□ 0.2
CPSF3-201ENST00000238112 DVL1P1P54792 670 aaPredicted RBP16.27■□□□□ 0.2
CPSF3-201ENST00000238112 TMEM187Q14656 261 aa16.27■□□□□ 0.2
CPSF3-201ENST00000238112 UBAC2Q8NBM4 344 aa16.27■□□□□ 0.2
CPSF3-201ENST00000238112 DYRK2Q92630 601 aa16.27■□□□□ 0.2
CPSF3-201ENST00000238112 TMEM38BQ9NVV0 291 aa16.27■□□□□ 0.2
CPSF3-201ENST00000238112 GEMIN2O14893 280 aaKnown RBP16.27■□□□□ 0.19
CPSF3-201ENST00000238112 DNPH1O43598 174 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 MBPP02686 304 aaPredicted RBP16.27■□□□□ 0.19
CPSF3-201ENST00000238112 B4GALT1P15291 398 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 ZNF32P17041 273 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 HTR5AP47898 357 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 ID4P47928 161 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 PIGYQ3MUY2 71 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 SLC22A25Q6T423 547 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 OSR2Q8N2R0 312 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 AKR7LQ8NHP1 331 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 GALNT14Q96FL9 552 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 KIRREL1Q96J84 757 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 ALKBH3Q96Q83 286 aaPredicted RBP16.27■□□□□ 0.19
CPSF3-201ENST00000238112 SUCNR1Q9BXA5 334 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 FAM212BQ9NTI7 297 aaPredicted RBP16.27■□□□□ 0.19
CPSF3-201ENST00000238112 PLA2G2EQ9NZK7 142 aa16.27■□□□□ 0.19
CPSF3-201ENST00000238112 MLF1P58340 268 aa16.26■□□□□ 0.19
CPSF3-201ENST00000238112 PHLDA2Q53GA4 152 aa16.26■□□□□ 0.19
CPSF3-201ENST00000238112 AVPI1Q5T686 147 aa16.26■□□□□ 0.19
CPSF3-201ENST00000238112 BRICD5Q6PL45 260 aa16.26■□□□□ 0.19
CPSF3-201ENST00000238112 AGBL5Q8NDL9 886 aa16.26■□□□□ 0.19
CPSF3-201ENST00000238112 OR10AD1Q8NGE0 317 aa16.26■□□□□ 0.19
CPSF3-201ENST00000238112 BCO1Q9HAY6 547 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms