RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MDC1Q14676 2089 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 CRB1P82279 1406 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SPATA31E1Q6ZUB1 1445 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 ZNF608Q9ULD9 1512 aaPredicted RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 TECTAO75443 2155 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TRAV8-6A0A0B4J262 113 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 A0A0B4J2C4 111 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 MUC21A0A0G2JKD1 596 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 A0A0G2JMP0 313 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 A0A0G2JQZ4 141 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 A0A0X1KG70 313 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 MUC21A0A140T8X8 626 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ISPDA4D126 451 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 GOLGA8OA6NCC3 632 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF860A6NHJ4 632 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SLC22A20A6NK97 555 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF99A8MXY4 864 aaPredicted RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 ODF3BA8MYP8 253 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 F5H5P2 479 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 GOLGA8NF8WBI6 632 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 H0Y8G0 127 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 H7C0C1 242 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 J3QT63 122 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 BCKDKO14874 412 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 LECT2O14960 151 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SIVA1O15304 175 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 GYG2O15488 501 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 RNF13O43567 381 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SYNGR2O43760 224 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 CACNG3O60359 315 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 FCN3O75636 299 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SMC2O95347 1197 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SOX14O95416 240 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 CXorf1O96002 111 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 HLA-AP01891 365 aaKnown RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 KRT14P02533 472 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 FTH1P02794 183 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ANGP03950 147 aaKnown RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 CATP04040 527 aaKnown RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 IFNW1P05000 195 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR4Q2P0C623 313 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TROVE2P10155 538 aaKnown RBP eCLIP0.01□□□□□ -2.41
VPS35-212ENST00000640313 PRB4P10163 310 aaPredicted RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 MYL2P10916 166 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 PTHLHP12272 177 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 GZMAP12544 262 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 GFAPP14136 432 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF24P17028 368 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 MYL9P24844 172 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 CNTFRP26992 372 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 PSMB9P28065 219 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 BLVRBP30043 206 aaPredicted RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 SLC1A2P43004 574 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 LGALS7P47929 136 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ATP5OP48047 213 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 GABRA4P48169 554 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TUFMP49411 452 aaKnown RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 SULT1E1P49888 294 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SLC18A1P54219 525 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TAS2R39P59534 338 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ATP6V0D1P61421 351 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 RPL18AQ02543 176 aaKnown RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 ST3GAL4Q11206 333 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZMYND11Q15326 602 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 PPP1R7Q15435 360 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SSX2Q16385 188 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TMEM241Q24JQ0 296 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 C5orf64Q2M2E5 130 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 LGALSLQ3ZCW2 172 aaPredicted RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF404Q494X3 552 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ARMC12Q5T9G4 340 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TMEM215Q68D42 235 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TTC23LQ6PF05 361 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF322Q6U7Q0 402 aaPredicted RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 Q6ZQT7 251 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SCXQ7RTU7 201 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 PAGE2Q7Z2X7 111 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SETD3Q86TU7 594 aaPredicted RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 TMEM25Q86YD3 366 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ITPRIPQ8IWB1 547 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 MSRB3Q8IXL7 192 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 AMN1Q8IY45 258 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 OFCC1Q8IZS5 231 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 JAGN1Q8N5M9 183 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZDHHC22Q8N966 263 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 DNAAF3Q8N9W5 541 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 BPIFB6Q8NFQ5 453 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR2M3Q8NG83 312 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR4K2Q8NGD2 314 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR5H2Q8NGV7 314 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR2V1Q8NHB1 315 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 LMX1AQ8TE12 382 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ORAOV1Q8WV07 137 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ASZ1Q8WWH4 475 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TMEM234Q8WY98 164 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP0.01□□□□□ -2.41
VPS35-212ENST00000640313 CCL17Q92583 94 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 RBPMSQ93062 196 aaKnown RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 APOBEC3DQ96AK3 386 aaPredicted RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 APH1AQ96BI3 265 aa0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms