RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 CHST6Q9GZX3 395 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 RBFOX1Q9NWB1 397 aaKnown RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 COL1A1P02452 1464 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 IGKV3-7A0A075B6H7 116 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 TMED7-TICAM2A0A0A6YYA0 188 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 IGKV3OR2-268A0A0C4DH90 116 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 FAM157CP0CG43 387 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 PGA3P0DJD8 388 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 PIGPP57054 158 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 ANKRD55Q3KP44 614 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 ABHD17CQ6PCB6 329 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 TP53INP2Q8IXH6 220 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 LRRC29Q8WV35 223 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 RAX2Q96IS3 184 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 LPAR2Q9HBW0 351 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 TMED7Q9Y3B3 224 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 PLIN4Q96Q06 1357 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 MALRD1Q5VYJ5 2156 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 DOCK2Q92608 1830 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 A8MWL6 223 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 CA2P00918 260 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 PF4P02776 101 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 CYBAP13498 195 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 FDXRP22570 491 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 AVPR2P30518 371 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 RAC3P60763 192 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 RACK1P63244 317 aaKnown RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 EGR3Q06889 387 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 HIST3H3Q16695 136 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 FNDC7Q5VTL7 733 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 CLEC2AQ6UVW9 174 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 DPPA4Q7L190 304 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 SCAMP4Q969E2 229 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 C6orf106Q9H6K1 298 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 PHLDA3Q9Y5J5 127 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 MEX3AA1L020 520 aaKnown RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 SIX6O95475 246 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 FGF3P11487 239 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 ZNF25P17030 456 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 GABRB1P18505 474 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 GABRA6Q16445 453 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 TECRLQ5HYJ1 363 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 CLEC14AQ86T13 490 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 MED30Q96HR3 178 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 ZNF300Q96RE9 604 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 IL21Q9HBE4 155 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 LOC285556D6RIA3 1793 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 TRAV38-1A0A0B4J264 116 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 KLK10O43240 276 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 HCRTR1O43613 425 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 DDOSTP39656 456 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 LYZP61626 148 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 SOX4Q06945 474 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 EXOSC7Q15024 291 aaKnown RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 TWIST1Q15672 202 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 HYAL4Q2M3T9 481 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 IER5LQ5T953 404 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 OR2C3Q8N628 320 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 HDAC8Q9BY41 377 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 LHPPQ9H008 270 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 TMEM38AQ9H6F2 299 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 ARHGEF28Q8N1W1 1705 aaKnown RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 TRAV20A0A0B4J274 112 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 J3KRW8 73 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 COL8A1P27658 744 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 PSMB6P28072 239 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 PTGIRP43119 386 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 CSNK1DP48730 415 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 CSNK1EP49674 416 aaKnown RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 SUMO2P61956 95 aaKnown RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 SUMO4Q6EEV6 95 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 FBXO17Q96EF6 278 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 MS4A10Q96PG2 267 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 PKMYT1Q99640 499 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 NARFLQ9H6Q4 476 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 ZNF665Q9H7R5 613 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 DCAF13Q9NV06 445 aaKnown RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 CALCBP10092 127 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 TEAD1P28347 426 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 LIPAP38571 399 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 FUT6P51993 359 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 MYPOPQ86VE0 399 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 RPS19BP1Q86WX3 136 aaKnown RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 LILRA2Q8N149 483 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 RBPMSQ93062 196 aaKnown RBP5.44□□□□□ -1.54
SCN1A-212ENST00000636194 RBKSQ9H477 322 aa5.44□□□□□ -1.54
SCN1A-212ENST00000636194 DCCP43146 1447 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 ZNF354AO60765 605 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-212ENST00000636194 C1orf105O95561 183 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 OPN1LWP04000 364 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 RPL12P30050 165 aaKnown RBP5.43□□□□□ -1.54
SCN1A-212ENST00000636194 HAAOP46952 286 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 PRLHRP49683 370 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 CLDN15P56746 228 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 NKAIN1Q4KMZ8 207 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 C1orf140Q5VVS0 124 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 OR13H1Q8NG92 308 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 GALNT14Q96FL9 552 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 RAB40CQ96S21 281 aa5.43□□□□□ -1.54
SCN1A-212ENST00000636194 ZNF2Q9BSG1 426 aaPredicted RBP5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms