RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 MRPL20Q9BYC9 149 aaKnown RBP0.56□□□□□ -2.32
SCN1A-208ENST00000625916 TMEM185BQ9H7F4 350 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 REEP1Q9H902 201 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 RHOFQ9HBH0 211 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF286AQ9HBT8 521 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 CCNB1IP1Q9NPC3 277 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 NAGKQ9UJ70 344 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 VWA8A3KMH1 1905 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 SIGLEC1Q9BZZ2 1709 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 KCNE1BA0A087WTH5 132 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 IGKV2-29A2NJV5 120 aaPredicted RBP0.55□□□□□ -2.32
SCN1A-208ENST00000625916 XRCC2O43543 280 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 FCN3O75636 299 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 CTAG2O75638 210 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 CRTAPO75718 401 aaPredicted RBP0.55□□□□□ -2.32
SCN1A-208ENST00000625916 S1PR2O95136 353 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 IGKV1D-33P01593 117 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 IGKV1-33P01594 117 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 IFNW1P05000 195 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 ERCC1P07992 297 aaPredicted RBP0.55□□□□□ -2.32
SCN1A-208ENST00000625916 GZMAP12544 262 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 NBL1P41271 181 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 SLC1A2P43004 574 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 PSMB2P49721 201 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF140P52738 457 aaPredicted RBP0.55□□□□□ -2.32
SCN1A-208ENST00000625916 SLC18A1P54219 525 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 MTPNP58546 118 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 PRDX4Q13162 271 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 ELOCQ15369 112 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 CST6Q15828 149 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 FBXL19-AS1Q494R0 122 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 LRRC66Q68CR7 880 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 FAM231DQ6ZW35 169 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 NDUFAF7Q7L592 441 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 LYZL2Q7Z4W2 148 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 SLC7A5P1Q8MH63 180 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 ZCCHC24Q8N2G6 241 aaKnown RBP0.55□□□□□ -2.32
SCN1A-208ENST00000625916 ARL6IP6Q8N6S5 226 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 Q8NAQ8 132 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 OR8A1Q8NGG7 326 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 OR10D4PQ8NGN7 298 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 OR8S1Q8NH09 359 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 ITFG1Q8TB96 612 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 NRGNQ92686 78 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 OR8B2Q96RD0 313 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 CHP1Q99653 195 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 GABARAPL1Q9H0R8 117 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 KIR3DX1Q9H7L2 352 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 TAC3Q9UHF0 121 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF780BQ9Y6R6 833 aa0.55□□□□□ -2.32
SCN1A-208ENST00000625916 IGHV3-21A0A0B4J1V1 117 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 C19orf71A6NCJ1 209 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 MPHOSPH10O00566 681 aaKnown RBP0.54□□□□□ -2.32
SCN1A-208ENST00000625916 FFAR1O14842 300 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 ZBTB5O15062 677 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 MPDU1O75352 247 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 TTC4O95801 387 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 OXTP01178 125 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 GFAPP14136 432 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 RPS15P62841 145 aaKnown RBP0.54□□□□□ -2.32
SCN1A-208ENST00000625916 SLC35A1P78382 337 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 LAMTOR4Q0VGL1 99 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 MERTKQ12866 999 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 ITIH4Q14624 930 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 TNXAQ16473 311 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 TTC19Q6DKK2 380 aaPredicted RBP0.54□□□□□ -2.32
SCN1A-208ENST00000625916 THOC7Q6I9Y2 204 aaKnown RBP0.54□□□□□ -2.32
SCN1A-208ENST00000625916 SSX9Q7RTT3 188 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 LUZP2Q86TE4 346 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 CYB561A3Q8NBI2 242 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF738Q8NE65 137 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 OR10Z1Q8NGY1 313 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 OR52E5Q8NH55 327 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 ING5Q8WYH8 240 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 MCUR1Q96AQ8 359 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 JSRP1Q96MG2 331 aaPredicted RBP0.54□□□□□ -2.32
SCN1A-208ENST00000625916 AGMATQ9BSE5 352 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 TTTY12Q9BZ98 90 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 SRRQ9GZT4 340 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 FAM192AQ9GZU8 254 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 ARV1Q9H2C2 271 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 TXNIPQ9H3M7 391 aa0.54□□□□□ -2.32
SCN1A-208ENST00000625916 GEMIN7Q9H840 131 aaKnown RBP0.54□□□□□ -2.32
SCN1A-208ENST00000625916 C20orf96Q9NUD7 363 aaPredicted RBP0.54□□□□□ -2.32
SCN1A-208ENST00000625916 RBM22Q9NW64 420 aaKnown RBP eCLIP0.54□□□□□ -2.32
SCN1A-208ENST00000625916 CHTOPQ9Y3Y2 248 aaKnown RBP0.54□□□□□ -2.32
SCN1A-208ENST00000625916 TRAV8-4A0A0B4J246 113 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 A0A0B4J2E0 115 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF860A6NHJ4 632 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 A8MWP4 228 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 H3BMM0 161 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 LY6LH3BQJ8 138 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 ISLRO14498 428 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 NDUFS5O43920 106 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 CACNG3O60359 315 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 OR2A4O95047 310 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 AGTP01019 485 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 P01737 135 aa0.53□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF22P17026 224 aaPredicted RBP0.53□□□□□ -2.32
SCN1A-208ENST00000625916 HOXB8P17481 243 aaPredicted RBP0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms