RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ZNF700Q9H0M5 742 aa16.12■□□□□ 0.17
UPF1-210ENST00000600689 CABIN1Q9Y6J0 2220 aa16.12■□□□□ 0.17
UPF1-210ENST00000600689 IGKV1-9A0A0C4DH69 117 aa16.12■□□□□ 0.17
UPF1-210ENST00000600689 TAAR5O14804 337 aa16.12■□□□□ 0.17
UPF1-210ENST00000600689 ANGPTL7O43827 346 aa16.12■□□□□ 0.17
UPF1-210ENST00000600689 PYY3Q5JQD4 70 aa16.12■□□□□ 0.17
UPF1-210ENST00000600689 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.12■□□□□ 0.17
UPF1-210ENST00000600689 WWTR1Q9GZV5 400 aa16.12■□□□□ 0.17
UPF1-210ENST00000600689 COPS7AQ9UBW8 275 aa16.12■□□□□ 0.17
UPF1-210ENST00000600689 IGHV2-5P01817 119 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 FCGR2AP12318 317 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 FAHP16930 419 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 RGS19P49795 217 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 CCL20P78556 96 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 C4orf17Q53FE4 359 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 GFI1BQ5VTD9 330 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 MEX3BQ6ZN04 569 aaKnown RBP16.11■□□□□ 0.17
UPF1-210ENST00000600689 OR5B2Q96R09 309 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 TCEAL7Q9BRU2 100 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 PRO1933Q9H354 126 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 CUTCQ9NTM9 273 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 MCTS1Q9ULC4 181 aaKnown RBP16.11■□□□□ 0.17
UPF1-210ENST00000600689 ZNF850A8MQ14 1090 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 DEDDO75618 318 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 MBPP02686 304 aaPredicted RBP16.11■□□□□ 0.17
UPF1-210ENST00000600689 IFI6P09912 130 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 SFTPDP35247 375 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 SOHLH1Q5JUK2 328 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 FAM180AQ6UWF9 173 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 HIST2H3AQ71DI3 136 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 ZFP62Q8NB50 900 aaPredicted RBP16.11■□□□□ 0.17
UPF1-210ENST00000600689 OR10D4PQ8NGN7 298 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 PLEKHJ1Q9NW61 149 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 LUZP4Q9P127 313 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 LHFPL6Q9Y693 200 aa16.11■□□□□ 0.17
UPF1-210ENST00000600689 MYF5P13349 255 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 CD38P28907 300 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 DAP3P51398 398 aaKnown RBP16.1■□□□□ 0.17
UPF1-210ENST00000600689 PIGPP57054 158 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 FOXF1Q12946 379 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 TCTN2Q96GX1 697 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 FAM86C1Q9NVL1 165 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 IGKV3-11P04433 115 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 OR5AC1P0C628 307 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 ARL4DP49703 201 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 RPS23P62266 143 aaKnown RBP16.1■□□□□ 0.17
UPF1-210ENST00000600689 COL19A1Q14993 1142 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 KISS1Q15726 138 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 C17orf78Q8N4C9 275 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 SUMF2Q8NBJ7 301 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 EMG1Q92979 244 aaKnown RBP16.1■□□□□ 0.17
UPF1-210ENST00000600689 GNRHR2Q96P88 292 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 TMPRSS5Q9H3S3 457 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 CXorf65A6NEN9 183 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 A6NIZ1 184 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 FTCDNL1E5RQL4 147 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 MASP2O00187 686 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 TSPAN2O60636 221 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 IFNA17P01571 189 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 LYL1P12980 280 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 PRF1P14222 555 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 S100A2P29034 98 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 RAP1BP61224 184 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 RAP1AP62834 184 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 DEFA6Q01524 100 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 IL15RAQ13261 267 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 OPN5Q6U736 354 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 OR52M1Q8NGK5 317 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 MR1Q95460 341 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 GPHA2Q96T91 129 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 PECRQ9BY49 303 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 PARPBPQ9NWS1 579 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 STARD10Q9Y365 291 aa16.1■□□□□ 0.17
UPF1-210ENST00000600689 SCGNO76038 276 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 THBS4P35443 961 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 FASLGP48023 281 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 TAF9Q16594 264 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 LHFPL1Q86WI0 220 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 WDFY4Q6ZS81 3184 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 SRFP11831 508 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 ZNF17P17021 662 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 MDKP21741 143 aaPredicted RBP16.09■□□□□ 0.17
UPF1-210ENST00000600689 ZNF239Q16600 458 aaKnown RBP16.09■□□□□ 0.17
UPF1-210ENST00000600689 ABCA11PQ4W5N1 156 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 LRRC18Q8N456 261 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 OR1J1Q8NGS3 322 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 PGAM5Q96HS1 289 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 FAAP24Q9BTP7 215 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 TGIF2Q9GZN2 237 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 PADI1Q9ULC6 663 aa16.09■□□□□ 0.17
UPF1-210ENST00000600689 CCDC85CA6NKD9 419 aa16.08■□□□□ 0.17
UPF1-210ENST00000600689 H0YL77 283 aa16.08■□□□□ 0.17
UPF1-210ENST00000600689 SLC35A1P78382 337 aa16.08■□□□□ 0.17
UPF1-210ENST00000600689 DTX1Q86Y01 620 aa16.08■□□□□ 0.17
UPF1-210ENST00000600689 OR11L1Q8NGX0 322 aa16.08■□□□□ 0.17
UPF1-210ENST00000600689 STT3BQ8TCJ2 826 aa16.08■□□□□ 0.17
UPF1-210ENST00000600689 NELFAQ9H3P2 528 aa16.08■□□□□ 0.17
UPF1-210ENST00000600689 LIME1Q9H400 295 aa16.08■□□□□ 0.17
UPF1-210ENST00000600689 SERINC1Q9NRX5 453 aa16.08■□□□□ 0.17
UPF1-210ENST00000600689 SHANK1Q9Y566 2161 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms