RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 MT-ND2P03891 347 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 TFF1P04155 84 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 MUC1P15941 1255 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 ATF1P18846 271 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 CRHBPP24387 322 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 HAAOP46952 286 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 ERVK11-1P61568 191 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 ATPAF1Q5TC12 328 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 WDR25Q64LD2 544 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 ANGPTL5Q86XS5 388 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 PARP16Q8N5Y8 322 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 POC1AQ8NBT0 407 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 OR13C3Q8NGS6 347 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 ANGPTL6Q8NI99 470 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 TRMT10AQ8TBZ6 339 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 NPRL2Q8WTW4 380 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 C12orf43Q96C57 262 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 ZNF488Q96MN9 340 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 TECTBQ96PL2 329 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 PCDHB10Q9UN67 800 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 GATBO75879 557 aaKnown RBP16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 ACAA1P09110 424 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 FUT6P51993 359 aa16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 PRIMA1Q86XR5 153 aa16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 ZNF573Q86YE8 665 aa16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 STX19Q8N4C7 294 aa16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 ZFP41Q8N8Y5 198 aa16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 DNAAF1Q8NEP3 725 aa16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 OR13C5Q8NGS8 318 aa16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 NRIP2Q9BQI9 281 aa16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 SSBP3Q9BWW4 388 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 PKIBQ9C010 78 aa16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 TRIM36Q9NQ86 728 aa16.21■□□□□ 0.19
SHKBP1-221ENST00000599833 IGKV1D-17A0A075B6S4 117 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 TRBV5-5A0A0J9YX44 114 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 C22orf46C9J442 243 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 PTGES3LE9PB15 166 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 F8VVB4 439 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 F8VWA3 439 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 ALX3O95076 343 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 FSHBP01225 129 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 PITPNBP48739 271 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 WNT4P56705 351 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 IL24Q13007 206 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 ZNF788Q6ZQV5 615 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 OR8B3Q8NGG8 313 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 GHSRQ92847 366 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 CNBD2Q96M20 576 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 GAFA1Q96PS6 74 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 OR5M11Q96RB7 305 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 OR8B2Q96RD0 313 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 ZNF184Q99676 751 aaPredicted RBP16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 COMMD4Q9H0A8 199 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 RASSF4Q9H2L5 321 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 MTCH1Q9NZJ7 389 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 CDC42EP3Q9UKI2 254 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 INSIG2Q9Y5U4 225 aa16.2■□□□□ 0.18
SHKBP1-221ENST00000599833 FAM230AA0A1W2PPH8 454 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 ADAM20O43506 726 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 NDUFA2O43678 99 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 SELLP14151 372 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 AZGP1P25311 298 aaKnown RBP16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 ACSM1Q08AH1 577 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 KCNJ8Q15842 424 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 MICBQ29980 383 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 ESCO2Q56NI9 601 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 FAM216BQ8N7L0 139 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 OR5T2Q8NGG2 359 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 CCL13Q99616 98 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 SNTG1Q9NSN8 517 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 NLKQ9UBE8 527 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 ATRQ13535 2644 aa16.19■□□□□ 0.18
SHKBP1-221ENST00000599833 DENRO43583 198 aaKnown RBP16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 CD1AP06126 327 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 PSG2P11465 335 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 ZNF20P17024 532 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 GLRA1P23415 457 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 GMFBP60983 142 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 GNB2P62879 340 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 PAX8Q06710 450 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 MED21Q13503 144 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 CNN3Q15417 329 aaKnown RBP16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 ACP7Q6ZNF0 438 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 OR13C9Q8NGT0 318 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 ZNF671Q8TAW3 534 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 SPSB1Q96BD6 273 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 DNTTIP1Q9H147 329 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 ZCCHC4Q9H5U6 513 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 CHCHD3Q9NX63 227 aaKnown RBP16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 LPAR3Q9UBY5 353 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 SLC7A11Q9UPY5 501 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 DHDHQ9UQ10 334 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 ZNF281Q9Y2X9 895 aa16.18■□□□□ 0.18
SHKBP1-221ENST00000599833 ANK2Q01484 3957 aa16.17■□□□□ 0.18
SHKBP1-221ENST00000599833 IGHV2-70DA0A0C4DH43 119 aa16.17■□□□□ 0.18
SHKBP1-221ENST00000599833 IGKV1-12A0A0C4DH73 117 aa16.17■□□□□ 0.18
SHKBP1-221ENST00000599833 MYL12BO14950 172 aa16.17■□□□□ 0.18
SHKBP1-221ENST00000599833 SERPINA3P01011 423 aa16.17■□□□□ 0.18
SHKBP1-221ENST00000599833 IGKV1D-12P01611 117 aa16.17■□□□□ 0.18
SHKBP1-221ENST00000599833 RPSAP08865 295 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms