RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 NEK6Q9HC98 313 aa12.66□□□□□ -0.38
TRIM28-207ENST00000597136 NOP16Q9Y3C1 178 aaKnown RBP12.66□□□□□ -0.38
TRIM28-207ENST00000597136 A0A0G2JK05 382 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 IGHV1-69-2A0A0G2JMI3 117 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 FAM230AA0A1W2PPH8 454 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 PQLC2LA1A4F0 135 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 SMAD7O15105 426 aaKnown RBP12.65□□□□□ -0.38
TRIM28-207ENST00000597136 MAGEB3O15480 346 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 RP2O75695 350 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 THBS2P35442 1172 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 PSMD7P51665 324 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 GPM6AP51674 278 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 RIN1Q13671 783 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 CRIP3Q6Q6R5 217 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 LYPD6Q86Y78 171 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 CDH26Q8IXH8 852 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 DYNC2LI1Q8TCX1 351 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 SLC25A46Q96AG3 418 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 RNF170Q96K19 258 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 OR2V2Q96R30 315 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 DIRC2Q96SL1 478 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 REG4Q9BYZ8 158 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 V9GY05 133 aa12.65□□□□□ -0.38
TRIM28-207ENST00000597136 NIPBLQ6KC79 2804 aaeCLIP12.65□□□□□ -0.382e-8■□□□□ 11
TRIM28-207ENST00000597136 SETD2Q9BYW2 2564 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-207ENST00000597136 IGKV1-27A0A075B6S5 117 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 A0A096LNT2 108 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-207ENST00000597136 LOC100289279A0A1B0GTE1 492 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 OR5B21A6NL26 309 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 NOTOA8MTQ0 251 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 ZNF732B4DXR9 585 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 CD99P14209 185 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 ZNF182P17025 639 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-207ENST00000597136 RBP2P50120 134 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 MTCP1P56278 107 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 GNG3P63215 75 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 KISS1Q15726 138 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 GLT8D1Q68CQ7 371 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 LHFPL2Q6ZUX7 228 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 JAGN1Q8N5M9 183 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 SPERTQ8NA61 448 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 BORCS8Q96FH0 119 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 MEGF10Q96KG7 1140 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 NKX3-1Q99801 234 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-207ENST00000597136 SMR3AQ99954 134 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 MICU1Q9BPX6 476 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 RTL8AQ9BWD3 113 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 BARHL1Q9BZE3 327 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 EGLN1Q9GZT9 426 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 METTL17Q9H7H0 456 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-207ENST00000597136 DLL4Q9NR61 685 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 IL19Q9UHD0 177 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 NSD1Q96L73 2696 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-207ENST00000597136 WNT9BO14905 357 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 TNFSF4P23510 183 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 GIFP27352 417 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 ZNF93P35789 620 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-207ENST00000597136 PMELP40967 661 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 ATP1B3P54709 279 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 DSCR9P59020 149 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 MPPED2Q15777 294 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 FAM76BQ5HYJ3 339 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 SFXN4Q6P4A7 337 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 CCL17Q92583 94 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 FOXRED1Q96CU9 486 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-207ENST00000597136 UQCC2Q9BRT2 126 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 DCUN1D5Q9BTE7 237 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 BPESC1Q9GZL8 116 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 GCM1Q9NP62 436 aa12.64□□□□□ -0.39
TRIM28-207ENST00000597136 IFITM5A6NNB3 132 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 AIPO00170 330 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 NR4A2P43354 598 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 RORCP51449 518 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 HOXA4Q00056 320 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-207ENST00000597136 CNPY1Q3B7I2 92 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 C1orf100Q5SVJ3 147 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 PRAMEF6Q5VXH4 476 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 WDR86Q86TI4 376 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 CROCCP3Q8IVE0 287 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 RFT1Q96AA3 541 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 CPNE2Q96FN4 548 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-207ENST00000597136 CNTD2Q9H8S5 307 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 CHODLQ9H9P2 273 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 MYOZ1Q9NP98 299 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-207ENST00000597136 C14orf119Q9NWQ9 140 aa12.63□□□□□ -0.39
TRIM28-207ENST00000597136 IGHV4-61A0A0C4DH41 118 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 TMEM210A6NLX4 147 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 SLC17A2O00624 439 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 PPIHO43447 177 aaKnown RBP12.62□□□□□ -0.39
TRIM28-207ENST00000597136 CSF3P09919 207 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 CFPP27918 469 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 CD200P41217 278 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 MRPS11P82912 194 aaKnown RBP12.62□□□□□ -0.39
TRIM28-207ENST00000597136 MZT1Q08AG7 82 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 HFEQ30201 348 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 FAM166AQ6J272 317 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 MOGAT3Q86VF5 341 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 ANGPTL5Q86XS5 388 aa12.62□□□□□ -0.39
TRIM28-207ENST00000597136 ZNF573Q86YE8 665 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms