RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ARGFXA6NJG6 315 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 CSTBP04080 98 aaKnown RBP13.43□□□□□ -0.26
UPF1-204ENST00000596842 RPL12P30050 165 aaKnown RBP13.43□□□□□ -0.26
UPF1-204ENST00000596842 RAB5CP51148 216 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 HIST2H3AQ71DI3 136 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 C2orf50Q96LR7 162 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.43□□□□□ -0.26
UPF1-204ENST00000596842 ZNF581Q9P0T4 197 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 IGKV1-9A0A0C4DH69 117 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 SPINK2P20155 84 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 PCK2Q16822 640 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 ST8SIA1Q92185 356 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 PTX4Q96A99 478 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 WBP1LQ9NX94 342 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 ALKBH4Q9NXW9 302 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 B3GAT1Q9P2W7 334 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 FBXL17Q9UF56 701 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 KNTC1P50748 2209 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 WDFY4Q6ZS81 3184 aa13.43□□□□□ -0.26
UPF1-204ENST00000596842 FRYQ5TBA9 3013 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 NXPH3O95157 252 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 PATE4P0C8F1 98 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 CD27P26842 260 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 THEM4Q5T1C6 240 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 APCDD1LQ8NCL9 501 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 SLC30A7Q8NEW0 376 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 NOXO1Q8NFA2 376 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 AKIRIN1Q9H9L7 192 aaPredicted RBP13.42□□□□□ -0.26
UPF1-204ENST00000596842 MEMO1Q9Y316 297 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 PCDHGA1Q9Y5H4 931 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 A0A1W2PPH5 198 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 MASP2O00187 686 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 GDF9O60383 454 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 TSPAN15O95858 294 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 IFNA17P01571 189 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 HPNP05981 417 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 F2RL1P55085 397 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 ABCA11PQ4W5N1 156 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 OGFOD3Q6PK18 319 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 MEX3BQ6ZN04 569 aaKnown RBP13.42□□□□□ -0.26
UPF1-204ENST00000596842 ARRDC1Q8N5I2 433 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 FAAP24Q9BTP7 215 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 MAP1BP46821 2468 aaKnown RBP13.42□□□□□ -0.26
UPF1-204ENST00000596842 CACNA1EQ15878 2313 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 C9JQL5 133 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 IFNA21P01568 189 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 GSTP1P09211 210 aaKnown RBP13.42□□□□□ -0.26
UPF1-204ENST00000596842 S100A7P31151 101 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 NKAIN1Q4KMZ8 207 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 RAET1LQ5VY80 246 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 ZNF561Q8N587 486 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 SUMF1Q8NBK3 374 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 MRPL24Q96A35 216 aaKnown RBP13.42□□□□□ -0.26
UPF1-204ENST00000596842 SCGB3A2Q96PL1 93 aa13.42□□□□□ -0.26
UPF1-204ENST00000596842 PQLC2LA1A4F0 135 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 PET100P0DJ07 73 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 TUBG1P23258 451 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 CFPP27918 469 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 LTBRP36941 435 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 SGPP2Q8IWX5 399 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 OR5L1Q8NGL2 311 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 MVB12AQ96EY5 273 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 DEFB126Q9BYW3 111 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 RAB18Q9NP72 206 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 TRIOBPQ9H2D6 2365 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 A0A087WZY1 265 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 DHRS7CA6NNS2 312 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 SCGNO76038 276 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 IFNA2P01563 188 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 FABP4P15090 132 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 OMGP23515 440 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 FPR2P25090 351 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 PTGER4P35408 488 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 MTCP1P56278 107 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 TMEM33P57088 247 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 EIF5AL1Q6IS14 154 aaKnown RBP13.41□□□□□ -0.26
UPF1-204ENST00000596842 FAHD2BQ6P2I3 314 aaPredicted RBP13.41□□□□□ -0.26
UPF1-204ENST00000596842 FAHD2AQ96GK7 314 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 SLC26A1Q9H2B4 701 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 IL17BQ9UHF5 180 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 ZNF107Q9UII5 783 aaPredicted RBP13.41□□□□□ -0.26
UPF1-204ENST00000596842 FBXO7Q9Y3I1 522 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 CLN5O75503 358 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 FAM157CP0CG43 387 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 COTL1Q14019 142 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 HPSE2Q8WWQ2 592 aa13.41□□□□□ -0.26
UPF1-204ENST00000596842 GAR1Q9NY12 217 aaKnown RBP13.41□□□□□ -0.26
UPF1-204ENST00000596842 FGF16O43320 207 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 IGHMP01871 453 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 CELA2AP08217 269 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 PRF1P14222 555 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 NKX6-1P78426 367 aaPredicted RBP13.4□□□□□ -0.26
UPF1-204ENST00000596842 FAM189A2Q15884 450 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 AADACL3Q5VUY0 350 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 CPEB2Q7Z5Q1 589 aaKnown RBP13.4□□□□□ -0.26
UPF1-204ENST00000596842 LYPD6Q86Y78 171 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 GNRHR2Q96P88 292 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 GGACTQ9BVM4 153 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 WIF1Q9Y5W5 379 aa13.4□□□□□ -0.26
UPF1-204ENST00000596842 ZNF407Q9C0G0 2248 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms