RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 OR6C68A6NDL8 312 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 ZNF878C9JN71 531 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 CCRL2O00421 344 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 SLC25A17O43808 307 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 HIST1H1CP16403 213 aaKnown RBP14.15□□□□□ -0.14
CLK3-227ENST00000570296 SLC15A1P46059 708 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 CDX1P47902 265 aaPredicted RBP14.15□□□□□ -0.14
CLK3-227ENST00000570296 CX3CR1P49238 355 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 GRB2P62993 217 aaKnown RBP14.15□□□□□ -0.14
CLK3-227ENST00000570296 SELENOWP63302 87 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 EIF2B1Q14232 305 aaKnown RBP14.15□□□□□ -0.14
CLK3-227ENST00000570296 LRRC23Q53EV4 343 aaPredicted RBP14.15□□□□□ -0.14
CLK3-227ENST00000570296 FGD3Q5JSP0 725 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 ERICH5Q6P6B1 374 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 TEX38Q6PEX7 206 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 SMARCD3Q6STE5 483 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 ZNF429Q86V71 674 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 ZDHHC23Q8IYP9 409 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 ANKRD42Q8N9B4 389 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 GATAD1Q8WUU5 269 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 ZNF714Q96N38 554 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 HIST1H2AAQ96QV6 131 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 SPATA25Q9BR10 227 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 CCDC28BQ9BUN5 200 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 TMEM133Q9H2Q1 129 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 FN3KQ9H479 309 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 RABEP2Q9H5N1 569 aa14.15□□□□□ -0.14
CLK3-227ENST00000570296 PSKH1P11801 424 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 GNG3P63215 75 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 GFOD2Q3B7J2 385 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 NANOGP8Q6NSW7 305 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 PRSS45Q7RTY3 260 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 TIGD4Q8IY51 512 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 DRAM1Q8N682 238 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 ZNF676Q8N7Q3 588 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 AQP3Q92482 292 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 PIGCQ92535 297 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 OR8B4Q96RC9 309 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 OR10A2Q9H208 303 aa14.14□□□□□ -0.15
CLK3-227ENST00000570296 UNC119BA6NIH7 251 aa14.13□□□□□ -0.15
CLK3-227ENST00000570296 TRIM64CA6NLI5 447 aa14.13□□□□□ -0.15
CLK3-227ENST00000570296 APOC1P02654 83 aa14.13□□□□□ -0.15
CLK3-227ENST00000570296 RPLP1P05386 114 aaKnown RBP14.13□□□□□ -0.15
CLK3-227ENST00000570296 GP9P14770 177 aa14.13□□□□□ -0.15
CLK3-227ENST00000570296 ACKR3P25106 362 aa14.13□□□□□ -0.15
CLK3-227ENST00000570296 KDELR2P33947 212 aa14.13□□□□□ -0.15
CLK3-227ENST00000570296 IDH3AP50213 366 aa14.13□□□□□ -0.15
CLK3-227ENST00000570296 FAM57BQ71RH2 274 aa14.13□□□□□ -0.15
CLK3-227ENST00000570296 POC1AQ8NBT0 407 aa14.13□□□□□ -0.15
CLK3-227ENST00000570296 TMEM120AQ9BXJ8 343 aa14.13□□□□□ -0.15
CLK3-227ENST00000570296 TVP23AA6NH52 213 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 ZNF732B4DXR9 585 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 PRR23D1E9PI22 279 aaPredicted RBP14.12□□□□□ -0.15
CLK3-227ENST00000570296 K7N7A8 449 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 IFNA6P05013 189 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 PRR23D2P0DMB1 279 aaPredicted RBP14.12□□□□□ -0.15
CLK3-227ENST00000570296 OMPP47874 163 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 BDH1Q02338 343 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 MEF2CQ06413 473 aaPredicted RBP14.12□□□□□ -0.15
CLK3-227ENST00000570296 STPG2Q8N412 459 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 SH3GL1Q99961 368 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 NRIP2Q9BQI9 281 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 EBF4Q9BQW3 602 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 VIPAS39Q9H9C1 493 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 LINC00527Q9UJ94 153 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 COMMD3-BMI1R4GMX3 469 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 TNCP24821 2201 aa14.12□□□□□ -0.15
CLK3-227ENST00000570296 MEX3AA1L020 520 aaKnown RBP14.11□□□□□ -0.15
CLK3-227ENST00000570296 LEUTXA8MZ59 168 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 SPARCP09486 303 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 FAM106CPP0CH98 169 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 SPNP16150 400 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 HSD11B1P28845 292 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 SLC6A6P31641 620 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 TNFAIP8L3Q5GJ75 292 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 CXorf66Q5JRM2 361 aaPredicted RBP14.11□□□□□ -0.15
CLK3-227ENST00000570296 TCF23Q7RTU1 214 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 FOXRED2Q8IWF2 684 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 RNF152Q8N8N0 203 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 PROKR2Q8NFJ6 384 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 FANK1Q8TC84 345 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 C4orf3Q8WVX3 66 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 ISYNA1Q9NPH2 558 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 ZNF319Q9P2F9 582 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 CD300AQ9UGN4 299 aa14.11□□□□□ -0.15
CLK3-227ENST00000570296 A8MZ25 164 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 IDH3BO43837 385 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 IGHG2P01859 326 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 IGHV4-30-4P0DP06 118 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 PYCR1P32322 319 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 EDDM3BP56851 147 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 ZNF121P58317 390 aaPredicted RBP14.1□□□□□ -0.15
CLK3-227ENST00000570296 PNLIPRP3Q17RR3 467 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 HAGHLQ6PII5 290 aaPredicted RBP14.1□□□□□ -0.15
CLK3-227ENST00000570296 SLC35E3Q7Z769 313 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 VTCN1Q7Z7D3 282 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 FAM71E2Q8N5Q1 922 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 C5orf56Q8N8D9 126 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 ZNF596Q8TC21 504 aa14.1□□□□□ -0.15
CLK3-227ENST00000570296 TSPEARQ8WU66 669 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms