RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 HES4Q9HCC6 221 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 DECR2Q9NUI1 292 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 C14orf119Q9NWQ9 140 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 C1orf123Q9NWV4 160 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 TXNL4BQ9NX01 149 aaKnown RBP7.79□□□□□ -1.16
VPS35-211ENST00000569950 STUB1Q9UNE7 303 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 FOXJ3Q9UPW0 622 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 PPP1R3CQ9UQK1 317 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 NOP16Q9Y3C1 178 aaKnown RBP7.79□□□□□ -1.16
VPS35-211ENST00000569950 IGHV4-61A0A0C4DH41 118 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.78□□□□□ -1.16
VPS35-211ENST00000569950 FAM230AA0A1W2PPH8 454 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 SPRY1O43609 319 aaPredicted RBP7.78□□□□□ -1.16
VPS35-211ENST00000569950 ZNF205O95201 554 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 FSTL3O95633 263 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 TFF1P04155 84 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 CD2P06729 351 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 SRMP19623 302 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 RAB3AP20336 220 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 TNFSF4P23510 183 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 HAAOP46952 286 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 OR3A4PP47883 348 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 NPBWR2P48146 333 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 KRTAP1-1Q07627 177 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 IL24Q13007 206 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 PDZK1IP1Q13113 114 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 CNN3Q15417 329 aaKnown RBP7.78□□□□□ -1.16
VPS35-211ENST00000569950 TRAM1Q15629 374 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 CTF1Q16619 201 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 CLEC12BQ2HXU8 276 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 C1orf100Q5SVJ3 147 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 TEX36Q5VZQ5 186 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 C22orf42Q6IC83 251 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 HAGHLQ6PII5 290 aaPredicted RBP7.78□□□□□ -1.16
VPS35-211ENST00000569950 CIARTQ8N365 385 aaPredicted RBP7.78□□□□□ -1.16
VPS35-211ENST00000569950 C19orf18Q8NEA5 215 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 Q8NFD4 153 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 OR4D6Q8NGJ1 314 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 OR10Z1Q8NGY1 313 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 CCL17Q92583 94 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 SLC25A28Q96A46 364 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 RFT1Q96AA3 541 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 FUNDC2Q9BWH2 189 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 BPESC1Q9GZL8 116 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 EGLN1Q9GZT9 426 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 TMEM165Q9HC07 324 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 MYOZ1Q9NP98 299 aaPredicted RBP7.78□□□□□ -1.16
VPS35-211ENST00000569950 TMEM138Q9NPI0 162 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 DLL4Q9NR61 685 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 IL36RNQ9UBH0 155 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 ZNF222Q9UK12 451 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 WIPI2Q9Y4P8 454 aa7.78□□□□□ -1.16
VPS35-211ENST00000569950 TRAV1-2A0A0B4J238 106 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 A0A1B0GW55 424 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 F5H0A9 414 aaPredicted RBP7.77□□□□□ -1.17
VPS35-211ENST00000569950 AKR7A2O43488 359 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 ANGPTL7O43827 346 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 SERPINA3P01011 423 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 MAS1P04201 325 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 SFTPBP07988 381 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 DUX4L2P0CJ85 424 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 DUX4L3P0CJ86 424 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 DUX4L4P0CJ87 422 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 DUX4L5P0CJ88 424 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 DUX4L6P0CJ89 424 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 DUX4L7P0CJ90 424 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 PRKACBP22694 351 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 MAPK3P27361 379 aaPredicted RBP7.77□□□□□ -1.17
VPS35-211ENST00000569950 CFPP27918 469 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 BDKRB2P30411 391 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 IL2RGP31785 369 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 CD80P33681 288 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 NR4A2P43354 598 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 RBP2P50120 134 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 PDLIM4P50479 330 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 MTCP1P56278 107 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 TMEM33P57088 247 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 OR10A3P58181 314 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 LMO4P61968 165 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 HSD17B12Q53GQ0 312 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 AVPI1Q5T686 147 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 DUX4L9Q6RFH8 374 aaPredicted RBP7.77□□□□□ -1.17
VPS35-211ENST00000569950 LYPD2Q6UXB3 125 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 SPNS3Q6ZMD2 512 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 LHFPL2Q6ZUX7 228 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 SLC25A26Q70HW3 274 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 LRRC28Q86X40 367 aaPredicted RBP7.77□□□□□ -1.17
VPS35-211ENST00000569950 FAM90A1Q86YD7 464 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 ZNF573Q86YE8 665 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 POC1AQ8NBT0 407 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 OR5D18Q8NGL1 313 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 LRRC29Q8WV35 223 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 FAM168AQ92567 244 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 BORCS8Q96FH0 119 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 Q96MF0 132 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 CHCHD6Q9BRQ6 235 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 RBM38Q9H0Z9 239 aaKnown RBP7.77□□□□□ -1.17
VPS35-211ENST00000569950 CNTD2Q9H8S5 307 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 FN3KRPQ9HA64 309 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 ZNF581Q9P0T4 197 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms