RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SLC22A25Q6T423 547 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 SLC38A9Q8NBW4 561 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 SAT2Q96F10 170 aaPredicted RBP12.74□□□□□ -0.37
VPS35-210ENST00000568784 BORCS8Q96FH0 119 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 SH3BGRL3Q9H299 93 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 UBE2J1Q9Y385 318 aaPredicted RBP12.74□□□□□ -0.37
VPS35-210ENST00000568784 IGHV1OR21-1A0A087WYE8 117 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 SLC22A8Q8TCC7 542 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 TCTEX1D2Q8WW35 142 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 MIOXQ9UGB7 285 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 SVILO95425 2214 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 IGKV3D-11A0A0A0MRZ8 115 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 A0A1W2PPE3 182 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 ONECUT2O95948 504 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 IFNA4P05014 189 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 GNRHRP30968 328 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 NOVA1P51513 510 aaKnown RBP12.73□□□□□ -0.37
VPS35-210ENST00000568784 NDUFA6P56556 154 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 B2MP61769 119 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 VAX1Q5SQQ9 334 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 POC1AQ8NBT0 407 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 APCDD1LQ8NCL9 501 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 FAM131CQ96AQ9 280 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 AQP10Q96PS8 301 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 ULBP2Q9BZM5 246 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 MCTS1Q9ULC4 181 aaKnown RBP12.73□□□□□ -0.37
VPS35-210ENST00000568784 ZNF407Q9C0G0 2248 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 IGKV1-9A0A0C4DH69 117 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 NUDT19A8MXV4 375 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 M0R135 149 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 SRSF10O75494 262 aaKnown RBP12.73□□□□□ -0.37
VPS35-210ENST00000568784 IGHV3-9P01782 118 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 EPHA1P21709 976 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 GABRA4P48169 554 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 C9orf135Q5VTT2 229 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 OR11L1Q8NGX0 322 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 HIST1H2BAQ96A08 127 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 ZNF799Q96GE5 643 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 RFNGQ9Y644 331 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 LTBP2Q14767 1821 aa12.73□□□□□ -0.37
VPS35-210ENST00000568784 TAAR5O14804 337 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 AADACL3Q5VUY0 350 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 OPN5Q6U736 354 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 MISPQ8IVT2 679 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 TMEM156Q8N614 296 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 PIGCQ92535 297 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 GNRHR2Q96P88 292 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 COA4Q9NYJ1 87 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 ZNF581Q9P0T4 197 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 C2CD4DB7Z1M9 353 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 MFNGO00587 321 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 NAT2P11245 290 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 QRFPP83859 136 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 HABP2Q14520 560 aaPredicted RBP12.72□□□□□ -0.37
VPS35-210ENST00000568784 FAM209BQ5JX69 171 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 PTPRSQ13332 1948 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 EFNA2O43921 213 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 SCRG1O75711 98 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 CST7O76096 145 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 GALNSP34059 522 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 SULT1A2P50226 295 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 TLE1Q04724 770 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 KIAA0141Q14154 515 aaPredicted RBP12.72□□□□□ -0.37
VPS35-210ENST00000568784 UBE2V2Q15819 145 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 PNLIPRP3Q17RR3 467 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 OR5L2Q8NGL0 311 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 MVB12AQ96EY5 273 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 SPSB2Q99619 263 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 PBDC1Q9BVG4 233 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 LMO7DNF2Z398 122 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 F10P00742 488 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 SMAD4Q13485 552 aaKnown RBP12.72□□□□□ -0.37
VPS35-210ENST00000568784 ZNF561Q8N587 486 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 DNAJB11Q9UBS4 358 aa12.72□□□□□ -0.37
VPS35-210ENST00000568784 MUC22E2RYF6 1773 aaPredicted RBP12.71□□□□□ -0.37
VPS35-210ENST00000568784 FIGNL2A6NMB9 653 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 DBX1A6NMT0 343 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 H7C1Q1 480 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 ECH1Q13011 328 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 UCN2Q96RP3 112 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 SLC7A11Q9UPY5 501 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 THADAQ6YHU6 1953 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 H3BP45 60 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 OR2C1O95371 312 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 CD27P26842 260 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 S100A2P29034 98 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 PPP1CCP36873 323 aaKnown RBP12.71□□□□□ -0.37
VPS35-210ENST00000568784 C9orf152Q5JTZ5 239 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 OR2G3Q8NGZ4 309 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 S100PBPQ96BU1 408 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 PIGQQ9BRB3 760 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 METTL9Q9H1A3 318 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 C19orf12Q9NSK7 152 aa12.71□□□□□ -0.37
VPS35-210ENST00000568784 FAM24AA6NFZ4 105 aa12.71□□□□□ -0.38
VPS35-210ENST00000568784 COLCA2A8K830 154 aa12.71□□□□□ -0.38
VPS35-210ENST00000568784 E9PLN8 166 aa12.71□□□□□ -0.38
VPS35-210ENST00000568784 ZFAND5O76080 213 aa12.71□□□□□ -0.38
VPS35-210ENST00000568784 MSR1P21757 451 aa12.71□□□□□ -0.38
VPS35-210ENST00000568784 RAB2AP61019 212 aa12.71□□□□□ -0.38
VPS35-210ENST00000568784 SRSF4Q08170 494 aaKnown RBP12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms