RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TMEM178BH3BS89 294 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 PPIHO43447 177 aaKnown RBP7.79□□□□□ -1.16
LDLR-210ENST00000559340 NDUFA2O43678 99 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 NOS1APO75052 506 aaPredicted RBP7.79□□□□□ -1.16
LDLR-210ENST00000559340 TMEM127O75204 238 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 NDUFS7O75251 213 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 ZNF780AO75290 641 aaPredicted RBP7.79□□□□□ -1.16
LDLR-210ENST00000559340 HEXAP06865 529 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 PPIAL4FP0DN26 164 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 TMEM225BP0DP42 221 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 RAB3BP20337 219 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 GLRA1P23415 457 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 GADD45AP24522 165 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 MPZP25189 248 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 GIFP27352 417 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 MTNR1BP49286 362 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 POU3F4P49335 361 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 ART1P52961 327 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 PDZK1IP1Q13113 114 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 RIN1Q13671 783 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 MPPED2Q15777 294 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 CLEC12BQ2HXU8 276 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 WDR82Q6UXN9 313 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 FAM90A1Q86YD7 464 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 CROCCP3Q8IVE0 287 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 MUC20Q8N307 709 aaPredicted RBP7.79□□□□□ -1.16
LDLR-210ENST00000559340 JAGN1Q8N5M9 183 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 PXT1Q8NFP0 134 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 OR52N4Q8NGI2 321 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 OR51F2Q8NH61 342 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 LRRC29Q8WV35 223 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 AQP3Q92482 292 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 YIPF5Q969M3 257 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 TMIGD2Q96BF3 282 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 FUNDC2Q9BWH2 189 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 METTL9Q9H1A3 318 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 OR51E2Q9H255 320 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 METTL17Q9H7H0 456 aaPredicted RBP7.79□□□□□ -1.16
LDLR-210ENST00000559340 PPP1R3EQ9H7J1 279 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 GHRLQ9UBU3 117 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 GLS2Q9UI32 602 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 ITGB1BP2Q9UKP3 347 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 PPIAL4AQ9Y536 164 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 V9GY05 133 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 TRAV8-7A0A075B6U6 113 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 IGHV3-64DA0A0J9YX35 117 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 SRRM5B3KS81 715 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 H3BUI4 141 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 LGALS8O00214 317 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 RP2O75695 350 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 NXPH2O95156 264 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 CSTBP04080 98 aaKnown RBP7.78□□□□□ -1.16
LDLR-210ENST00000559340 UBBP0CG47 229 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 MUC1P15941 1255 aaPredicted RBP7.78□□□□□ -1.16
LDLR-210ENST00000559340 MDH2P40926 338 aaKnown RBP7.78□□□□□ -1.16
LDLR-210ENST00000559340 PMELP40967 661 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 PTGFRP43088 359 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 INSL4Q14641 139 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 RSU1Q15404 277 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 MICBQ29980 383 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 SMIM21Q3B7S5 101 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 KRTAP21-3Q3LHN1 58 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 Q5PR19 223 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 GPR107Q5VW38 600 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 SPNS3Q6ZMD2 512 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 SLC25A26Q70HW3 274 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 WDR86Q86TI4 376 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 LRRTM1Q86UE6 522 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 ANGPTL5Q86XS5 388 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 C11orf53Q8IXP5 236 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 SPICQ8N5J4 248 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 ZNF525Q8N782 197 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 BOLLQ8N9W6 283 aaKnown RBP7.78□□□□□ -1.16
LDLR-210ENST00000559340 POC1AQ8NBT0 407 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 OR51A2Q8NGJ7 313 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 ZNF420Q8TAQ5 688 aaPredicted RBP7.78□□□□□ -1.16
LDLR-210ENST00000559340 C10orf105Q8TEF2 133 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 TNFAIP8L1Q8WVP5 186 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 CEP19Q96LK0 163 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 FAM192AQ9GZU8 254 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 ELL3Q9HB65 397 aaPredicted RBP7.78□□□□□ -1.16
LDLR-210ENST00000559340 PLGRKTQ9HBL7 147 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 NDUFA13Q9P0J0 144 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 DNAJB11Q9UBS4 358 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 PCDHB10Q9UN67 800 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 ING4Q9UNL4 249 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 TACC2O95359 2948 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 MED13LQ71F56 2210 aa7.78□□□□□ -1.16
LDLR-210ENST00000559340 IGKV1-27A0A075B6S5 117 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 OOEPA6NGQ2 149 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 LYNX1G3V0Z9 82 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 LY6HO94772 140 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 CYB5R3P00387 301 aaPredicted RBP7.77□□□□□ -1.17
LDLR-210ENST00000559340 LHBP01229 141 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 PGA5P0DJD9 388 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 LYNX1P0DP58 116 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 CD37P11049 281 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 HTR2CP28335 458 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 TMBIM6P55061 237 aa7.77□□□□□ -1.17
LDLR-210ENST00000559340 BTG1P62324 171 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms