RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TMEM255AQ5JRV8 349 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 IL34Q6ZMJ4 242 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 OR4D6Q8NGJ1 314 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 SNIP1Q8TAD8 396 aaKnown RBP11.02□□□□□ -0.64
SHMT2-229ENST00000557348 STOML3Q8TAV4 291 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 TNFAIP8L1Q8WVP5 186 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 PCNPQ8WW12 178 aaKnown RBP11.02□□□□□ -0.64
SHMT2-229ENST00000557348 TSNAXQ99598 290 aaKnown RBP11.02□□□□□ -0.64
SHMT2-229ENST00000557348 GINS4Q9BRT9 223 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 CST11Q9H112 138 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 ZFP57Q9NU63 452 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 COMMD9Q9P000 198 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 ZNF319Q9P2F9 582 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 SPRR3Q9UBC9 169 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 MRPS28Q9Y2Q9 187 aaKnown RBP11.02□□□□□ -0.64
SHMT2-229ENST00000557348 RHBDD3Q9Y3P4 386 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 PCP4L1A6NKN8 68 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 LGALS8O00214 317 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 KDM4BO94953 1096 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 PLATP00750 562 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 LCATP04180 440 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 SERPINA5P05154 406 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 ABOP16442 354 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 OR3A2P47893 321 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 TGFBR3Q03167 851 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 PLP2Q04941 152 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 PMPCAQ10713 525 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 SNTB1Q13884 538 aaKnown RBP11.01□□□□□ -0.65
SHMT2-229ENST00000557348 PNLIPRP3Q17RR3 467 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 RNFT1Q5M7Z0 435 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 SFRP5Q5T4F7 317 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 FBXW9Q5XUX1 488 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 OR2A2Q6IF42 318 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 FAHD2BQ6P2I3 314 aaPredicted RBP11.01□□□□□ -0.65
SHMT2-229ENST00000557348 ACOT7LQ6ZUV0 252 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 ZNF546Q86UE3 836 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 OR5AS1Q8N127 324 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 GLYATL2Q8WU03 294 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 FAHD2AQ96GK7 314 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 REEP6Q96HR9 211 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 GPER1Q99527 375 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 URM1Q9BTM9 101 aaKnown RBP11.01□□□□□ -0.65
SHMT2-229ENST00000557348 SEC11CQ9BY50 192 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 PLSCR2Q9NRY7 297 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 PIGLQ9Y2B2 252 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 TMEM14DPA8MWL7 114 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 J3QW42 95 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 FGF16O43320 207 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 H2BFSP57053 126 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 SRSF6Q13247 344 aaKnown RBP11.01□□□□□ -0.65
SHMT2-229ENST00000557348 RNF212Q495C1 297 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 RNASE12Q5GAN4 147 aaKnown RBP11.01□□□□□ -0.65
SHMT2-229ENST00000557348 AVPI1Q5T686 147 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 RTL6Q6ICC9 239 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 ANGPTL5Q86XS5 388 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 ZNF101Q8IZC7 436 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 BPIFCQ8NFQ6 507 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 GPX8Q8TED1 209 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 SSC4DQ8WTU2 575 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 ARL11Q969Q4 196 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 LYZL4Q96KX0 146 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 S100A13Q99584 98 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 ZNF251Q9BRH9 671 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 C1QTNF5Q9BXJ0 243 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 MS4A7Q9GZW8 240 aaPredicted RBP11.01□□□□□ -0.65
SHMT2-229ENST00000557348 CLCF1Q9UBD9 225 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 TNFSF18Q9UNG2 199 aa11.01□□□□□ -0.65
SHMT2-229ENST00000557348 PYCARD-AS1I3L0S3 204 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 EFSO43281 561 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 DBHP09172 617 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 TMIGD3P0DMS9 266 aaPredicted RBP11□□□□□ -0.65
SHMT2-229ENST00000557348 ZNF35P13682 527 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 ANXA7P20073 488 aaKnown RBP11□□□□□ -0.65
SHMT2-229ENST00000557348 MPZP25189 248 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 PMELP40967 661 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 EFNB2P52799 333 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 POLR2GP62487 172 aaKnown RBP eCLIP11□□□□□ -0.65
SHMT2-229ENST00000557348 QRFPP83859 136 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 CDNFQ49AH0 187 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 AKR7LQ8NHP1 331 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 MED12Q93074 2177 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 SPSB4Q96A44 273 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 SGK3Q96BR1 496 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 ZNF629Q9UEG4 869 aaPredicted RBP11□□□□□ -0.65
SHMT2-229ENST00000557348 POMT1Q9Y6A1 747 aa11□□□□□ -0.65
SHMT2-229ENST00000557348 AHRRA9YTQ3 701 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 RLN2P04090 185 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 GSTP1P09211 210 aaKnown RBP10.99□□□□□ -0.65
SHMT2-229ENST00000557348 VSIG8P0DPA2 414 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 TBPP20226 339 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 TAS2R19P59542 299 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 RAB5BP61020 215 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 EIF5AP63241 154 aaKnown RBP10.99□□□□□ -0.65
SHMT2-229ENST00000557348 MALLQ13021 153 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 OR8B8Q15620 311 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 HMGN3Q15651 99 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 KISS1Q15726 138 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 NKPD1Q17RQ9 610 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 SWI5Q1ZZU3 235 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 EIF2S3LQ2VIR3 472 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms