RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 MUC1P15941 1255 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 RAB3AP20336 220 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 CFHR2P36980 270 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 MAP2K4P45985 399 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 PITPNBP48739 271 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 DVL1P1P54792 670 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 GNB2P62879 340 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 IRF3Q14653 427 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 YIF1BQ5BJH7 314 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 TEX36Q5VZQ5 186 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 FAHD2BQ6P2I3 314 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 LHFPL2Q6ZUX7 228 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 PRSS48Q7RTY5 328 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 CALHM1Q8IU99 346 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 PARP16Q8N5Y8 322 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 DNAAF1Q8NEP3 725 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 RPS4Y2Q8TD47 263 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 TMEM106AQ96A25 262 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 RFT1Q96AA3 541 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 SPSB1Q96BD6 273 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 FAHD2AQ96GK7 314 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 CCL13Q99616 98 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 SSBP3Q9BWW4 388 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 PKIBQ9C010 78 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 HIF1ANQ9NWT6 349 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 TAS2R4Q9NYW5 299 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 CLN8Q9UBY8 286 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 OR5V1Q9UGF6 321 aa9.57□□□□□ -0.88
CCDC88C-212ENST00000556767 IGKV1-27A0A075B6S5 117 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 A0A1W2PPK0 400 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 NKX6-3A6NJ46 265 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 F5H0A9 414 aaPredicted RBP9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 TMPRSS2O15393 492 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 MAGEB3O15480 346 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 SULT1B1O43704 296 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 NXPH2O95156 264 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 PCMT1P22061 227 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 ZFP36P26651 326 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 GABRA2P47869 451 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 PPP3R1P63098 170 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 BDH1Q02338 343 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 DOC2BQ14184 412 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 CR1LQ2VPA4 569 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 Q499Y3 187 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 SLC25A26Q70HW3 274 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 SLC36A1Q7Z2H8 476 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 SATL1Q86VE3 508 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 POC1AQ8NBT0 407 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 OR5D18Q8NGL1 313 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 UFD1Q92890 307 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 SLAMF9Q96A28 289 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 C12orf43Q96C57 262 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 PGLYRP3Q96LB9 341 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 SPACA5Q96QH8 159 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 NLKQ9UBE8 527 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 LRCH1Q9Y2L9 728 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 LSM2Q9Y333 95 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 AKAP9Q99996 3911 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 MALRD1Q5VYJ5 2156 aa9.56□□□□□ -0.88
CCDC88C-212ENST00000556767 A0A0G2JMP0 313 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 TRBV5-5A0A0J9YX44 114 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 A0A0X1KG70 313 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 OR2AT4A6NND4 320 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 SPRY1O43609 319 aaPredicted RBP9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 TFF1P04155 84 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 PGA5P0DJD9 388 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 CPT2P23786 658 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 GABARAPL2P60520 117 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 ACSM1Q08AH1 577 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 IL24Q13007 206 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 IKZF1Q13422 519 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 SMIM21Q3B7S5 101 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 DCAF12L2Q5VW00 463 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 WDR25Q64LD2 544 aaPredicted RBP9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 ACP7Q6ZNF0 438 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 MKXQ8IYA7 352 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 FAM216BQ8N7L0 139 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 OR4M2Q8NGB6 313 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 OR51A2Q8NGJ7 313 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 ST8SIA4Q92187 359 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 ORAI1Q96D31 301 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 CEP19Q96LK0 163 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 OR14A2Q96R54 314 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 GPER1Q99527 375 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 TMED9Q9BVK6 235 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 BEX2Q9BXY8 128 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 SHARPINQ9H0F6 387 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 RASL12Q9NYN1 266 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 CTSZQ9UBR2 303 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 CKLFQ9UBR5 152 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 OR14J1Q9UGF5 321 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 ABCA2Q9BZC7 2435 aa9.55□□□□□ -0.88
CCDC88C-212ENST00000556767 TEP1Q99973 2627 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 A0A1B0GW55 424 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 ZNF879B4DU55 563 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 TRAPPC2LH3BP13 241 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 DVL1O14640 695 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 NDUFB3O43676 98 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 ANGPTL7O43827 346 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms