RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ARSBP15848 533 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 TNFSF4P23510 183 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 AZGP1P25311 298 aaKnown RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 CALCRP30988 508 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 APOBEC3AP31941 199 aaPredicted RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 TGFBR1P36897 503 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 MAGEB1P43366 347 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 BMXP51813 675 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ART1P52961 327 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 KLF3P57682 345 aaPredicted RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ARPC4P59998 168 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 PITPNAQ00169 270 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 SPOCK1Q08629 439 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 PRDX4Q13162 271 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 SNTB2Q13425 540 aaKnown RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 INSL4Q14641 139 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF846Q147U1 533 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ARL6IP1Q15041 203 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 OR8G1Q15617 311 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 RAB11BQ15907 218 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 CEACAM21Q3KPI0 293 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 CEP78Q5JTW2 689 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 SPANXN2Q5MJ10 180 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 C1orf100Q5SVJ3 147 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 FAM27D1Q5T7N8 215 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 PLCXD3Q63HM9 321 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 TMEM42Q69YG0 159 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 OR2T2Q6IF00 324 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF529Q6P280 563 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 BAIAP2L2Q6UXY1 529 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 LRRTM1Q86UE6 522 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 LRRC28Q86X40 367 aaPredicted RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ANGPTL5Q86XS5 388 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF573Q86YE8 665 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ZDHHC23Q8IYP9 409 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF101Q8IZC7 436 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ZSCAN4Q8NAM6 433 aaPredicted RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 OR56B2PQ8NGI1 322 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 OR13C9Q8NGT0 318 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 KCNG3Q8TAE7 436 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 LINC01560Q8TB33 94 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 FAM222BQ8WU58 562 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 GIMAP1Q8WWP7 306 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 RAB40AQ8WXH6 277 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 PTX4Q96A99 478 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ADAT3Q96EY9 351 aaPredicted RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 DIRAS2Q96HU8 199 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 RNF170Q96K19 258 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 BBC3Q96PG8 261 aaPredicted RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 URM1Q9BTM9 101 aaKnown RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 RTL8AQ9BWD3 113 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 PAPOLGQ9BWT3 736 aaKnown RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 WDR12Q9GZL7 423 aaKnown RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 SLIRPQ9GZT3 109 aaKnown RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 METTL9Q9H1A3 318 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 CXXC4Q9H2H0 198 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 PPIL3Q9H2H8 161 aaKnown RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 OR51B6Q9H340 312 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 METTL17Q9H7H0 456 aaPredicted RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF442Q9H7R0 627 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 HMG20AQ9NP66 347 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 DIABLOQ9NR28 239 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 GPR173Q9NS66 373 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 C11orf21Q9P2W6 132 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 COMMD3Q9UBI1 195 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 PLEKHB1Q9UF11 243 aaPredicted RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 DAPK2Q9UIK4 370 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 PURGQ9UJV8 347 aaKnown RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 RAB22AQ9UL26 194 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ING4Q9UNL4 249 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ETV7Q9Y603 341 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 ACACBO00763 2458 aa4.28□□□□□ -1.72
VTI1B-202ENST00000553619 RP1L1Q8IWN7 2480 aaPredicted RBP4.28□□□□□ -1.72
VTI1B-202ENST00000553619 DMXL1Q9Y485 3027 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 IGLV3-9A0A075B6K5 115 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 TRAV8-7A0A075B6U6 113 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 FAM230AA0A1W2PPH8 454 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 KRTAP23-1A1A580 65 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 WIPF3A6NGB9 483 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 A6NIN4 97 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 TMEM210A6NLX4 147 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 B9A039 149 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 CLDN25C9JDP6 229 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 CTDSP2O14595 271 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 ABCD4O14678 606 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 PEX14O75381 377 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 TOX4O94842 621 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 KDM4BO94953 1096 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 PRB1P04280 392 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 CHRM2P08172 466 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 TMEM225BP0DP42 221 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 VSIG10L2P0DP72 767 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 ACKR3P25106 362 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 PTGFRP43088 359 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 ALDH3B1P43353 468 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 UQCRFS1P47985 274 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 SRP9P49458 86 aaKnown RBP4.27□□□□□ -1.73
VTI1B-202ENST00000553619 MECP2P51608 486 aaKnown RBP4.27□□□□□ -1.73
VTI1B-202ENST00000553619 GNG3P63215 75 aa4.27□□□□□ -1.73
VTI1B-202ENST00000553619 NKX6-1P78426 367 aaPredicted RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms