RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RAB1AP62820 205 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 HSF1Q00613 529 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 USF2Q15853 346 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 OPN5Q6U736 354 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 HIST2H3AQ71DI3 136 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 ST6GALNAC3Q8NDV1 305 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 CASTOR1Q8WTX7 329 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SGCZQ96LD1 299 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 RNF126Q9BV68 326 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 NMES1Q9C002 83 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 CST11Q9H112 138 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SLCO5A1Q9H2Y9 848 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 PRO1933Q9H354 126 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SPACA1Q9HBV2 294 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SLC17A5Q9NRA2 495 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 NPIPA1Q9UND3 350 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 VSIG4Q9Y279 399 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 KLF13Q9Y2Y9 288 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 TRAV8-7A0A075B6U6 113 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 LOC100289279A0A1B0GTE1 492 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 FRG2CA6NGY1 282 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 KLRC4-KLRK1H3BQV0 150 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 DCTN6O00399 190 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 CRYABP02511 175 aaKnown RBP6.73□□□□□ -1.33
LIMA1-216ENST00000552909 PMP2P02689 132 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 EDN3P14138 238 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 NID1P14543 1247 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 HIST1H1CP16403 213 aaKnown RBP6.73□□□□□ -1.33
LIMA1-216ENST00000552909 RPS4Y1P22090 263 aaKnown RBP6.73□□□□□ -1.33
LIMA1-216ENST00000552909 TACR3P29371 465 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 SERPINF1P36955 418 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 RPS10P46783 165 aaKnown RBP6.73□□□□□ -1.33
LIMA1-216ENST00000552909 CX3CR1P49238 355 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 SULT1A2P50226 295 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 DCAF7P61962 342 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 LSM6P62312 80 aaKnown RBP6.73□□□□□ -1.33
LIMA1-216ENST00000552909 ADAM8P78325 824 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 MEF2DQ14814 521 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 TOMM20Q15388 145 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 RAB11BQ15907 218 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 MRPL2Q5T653 305 aaKnown RBP6.73□□□□□ -1.33
LIMA1-216ENST00000552909 HEPN1Q6WQI6 88 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF627Q7L945 461 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 BIVMQ86UB2 503 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 PNLDC1Q8NA58 520 aaKnown RBP6.73□□□□□ -1.33
LIMA1-216ENST00000552909 ZFP62Q8NB50 900 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-216ENST00000552909 ACBD4Q8NC06 268 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 OR2M7Q8NG81 312 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 OR6K6Q8NGW6 343 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 Q96M85 177 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 TNFRSF13CQ96RJ3 184 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 ADOQ96SZ5 270 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 SLC6A7Q99884 636 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 PRRT1Q99946 306 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 MRPL37Q9BZE1 423 aaKnown RBP6.73□□□□□ -1.33
LIMA1-216ENST00000552909 TAF9BQ9HBM6 251 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 DOK5Q9P104 306 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF107Q9UII5 783 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-216ENST00000552909 ZDHHC8Q9ULC8 765 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 DCHS2Q6V1P9 2916 aa6.73□□□□□ -1.33
LIMA1-216ENST00000552909 PCNX3Q9H6A9 2034 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 FAM166BA8MTA8 275 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF432O94892 652 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 LYPD3O95274 346 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 UTS2O95399 124 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 DUS4LO95620 317 aaKnown RBP6.72□□□□□ -1.33
LIMA1-216ENST00000552909 IL33O95760 270 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 CSN2P05814 226 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 GUSBP08236 651 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 OR8U9P0C7N5 309 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 RFPL3SP0C7P2 107 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 HKR1P10072 659 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 GRPRP30550 384 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 NUTF2P61970 127 aaKnown RBP6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF141Q15928 474 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.72□□□□□ -1.33
LIMA1-216ENST00000552909 C2orf76Q3KRA6 126 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ANKRD39Q53RE8 183 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 SLC35D3Q5M8T2 416 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 CYB5R2Q6BCY4 276 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 FAHD2BQ6P2I3 314 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-216ENST00000552909 GFRALQ6UXV0 394 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 Q6ZRG5 221 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ZDHHC22Q8N966 263 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 OR8U1Q8NH10 309 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 FAM3DQ96BQ1 224 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ARSGQ96EG1 525 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 FAHD2AQ96GK7 314 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 AQP10Q96PS8 301 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-216ENST00000552909 FLRT3Q9NZU0 649 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 OSGIN2Q9Y236 505 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 FLVCR1Q9Y5Y0 555 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ELOA3CA0A087WX78 387 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-216ENST00000552909 CLEC18AA5D8T8 446 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 C2orf72A6NCS6 295 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 MSGN1A6NI15 193 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF726A6NNF4 738 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 UMAD1C9J7I0 102 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ADAM10O14672 748 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms