RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ZNF726A6NNF4 738 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 MS4A18H0YCH9 400 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 SLC33A1O00400 549 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 ADAM10O14672 748 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CRTAPO75718 401 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 DXOO77932 396 aaKnown RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 BPNT1O95861 308 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H1BP16401 226 aaKnown RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 AMY2BP19961 511 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 FPR2P25090 351 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 HSD11B1P28845 292 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CRABP1P29762 137 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 RRADP55042 308 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CASP6P55212 293 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 PRSS12P56730 875 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 RAP1AP62834 184 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 SGCBQ16585 318 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 MS4A18Q3C1V0 323 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 TMEM182Q6ZP80 229 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 C5orf24Q7Z6I8 188 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 UBAC2Q8NBM4 344 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 OR5H2Q8NGV7 314 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 S100PBPQ96BU1 408 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 RAB39BQ96DA2 213 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 TCTN2Q96GX1 697 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 LIN37Q96GY3 246 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 TXNIPQ9H3M7 391 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 FBRSQ9HAH7 460 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 C19orf12Q9NSK7 152 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 GAR1Q9NY12 217 aaKnown RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 DNAJB11Q9UBS4 358 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 MMP17Q9ULZ9 603 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 ANAPC10Q9UM13 185 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 MRPS28Q9Y2Q9 187 aaKnown RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CACNA1GO43497 2377 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 TRAV36DV7A0A075B6V5 113 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 A8MVM7 634 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 IFNL4K9M1U5 179 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 NPIPB7O75200 414 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 PRH1P02810 166 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 HPNP05981 417 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 QDPRP09417 244 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 H2BFMP0C1H6 154 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 FABP4P15090 132 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CAMLGP49069 296 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 TAS2R31P59538 309 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CSNK2A1P68400 391 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 FAM3AP98173 230 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 TLE3Q04726 772 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 ARFRP1Q13795 201 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF674Q2M3X9 581 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 PRTGQ2VWP7 1150 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 Q3ZCU0 254 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF529Q6P280 563 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 BRICD5Q6PL45 260 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 LANCL3Q6ZV70 420 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 Q7L0L9 218 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 SSX9Q7RTT3 188 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 C6orf201Q7Z4U5 140 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 LYZL2Q7Z4W2 148 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 NKAIN3Q8N8D7 197 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CSNK2A3Q8NEV1 391 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 OR1J1Q8NGS3 322 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 FAM213BQ8TBF2 198 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 DYRK2Q92630 601 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 MVB12AQ96EY5 273 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 POM121Q96HA1 1249 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 FAM71F1Q96KD3 344 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CDCA3Q99618 268 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CDC6Q99741 560 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 SLC35B3Q9H1N7 401 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 METTL7AQ9H8H3 244 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 PISDQ9UG56 409 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 DCHS1Q96JQ0 3298 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 TMEM131Q92545 1883 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 EP300Q09472 2414 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 PRRC2CQ9Y520 2896 aaKnown RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 ADAMTS9Q9P2N4 1935 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CCDC163A0A0D9SF12 145 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 HSPB2A8KAH6 182 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 G3V3Y1 287 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 H3BQ15 152 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 JTBO76095 146 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 IL33O95760 270 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 BTF3P20290 206 aaKnown RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CAPZBP47756 277 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 RAB5CP51148 216 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 HNRNPKP61978 463 aaKnown RBP eCLIP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 IGLV3-21P80748 117 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-214ENST00000552783 CHAF1BQ13112 559 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 RSU1Q15404 277 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 RAB30Q15771 203 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 HSPB2Q16082 182 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 C14orf28Q4W4Y0 310 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF440Q8IYI8 595 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 HIST3H2BBQ8N257 126 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 GPBAR1Q8TDU6 330 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 ADAMTS18Q8TE60 1221 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 RNF133Q8WVZ7 376 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 C11orf40Q8WZ69 217 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms