RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 RFNGQ9Y644 331 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 FREM2Q5SZK8 3169 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 TRAV20A0A0B4J274 112 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 A0A1W2PNV4 684 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 IFNA2P01563 188 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 IGLV3-19P01714 112 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ARG1P05089 322 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 OR8U8P0C7N1 319 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 GLI4P10075 376 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 NAT2P11245 290 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 PRF1P14222 555 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 EN2P19622 333 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 SNCAP37840 140 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 PMELP40967 661 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 CLRN1P58418 232 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 C17orf67Q0P5P2 114 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 FABP9Q0Z7S8 132 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF239Q16600 458 aaKnown RBP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 RSPO1Q2MKA7 263 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 FAM209BQ5JX69 171 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 OPN5Q6U736 354 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF283Q8N7M2 679 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 UBAC2Q8NBM4 344 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 OR9K2Q8NGE7 335 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 OR2AJ1Q8NGZ0 328 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ZDHHC12Q96GR4 267 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF251Q9BRH9 671 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF2Q9BSG1 426 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 RAB33BQ9H082 229 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 SH3BGRL3Q9H299 93 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 NKX2-4Q9H2Z4 354 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 NIT2Q9NQR4 276 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF701Q9NV72 531 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 GHRLQ9UBU3 117 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 TUBD1Q9UJT1 453 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 C14orf166Q9Y224 244 aaKnown RBP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 VPS13AQ96RL7 3174 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 TRBV23-1A0A0A0MS06 115 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 A0A1B0GV50 99 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 A0A1W2PPE2 198 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 A0A1W2PR77 199 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 VSTM2BA6NLU5 285 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 XRCC2O43543 280 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 DIRAS3O95661 229 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 SCGB1D2O95969 90 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 IGLV3-1P01715 115 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 IGHV2-5P01817 119 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 MBPP02686 304 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 QDPRP09417 244 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF806P0C7X5 589 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 FAHP16930 419 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 LMO1P25800 156 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 RBMXP38159 391 aaKnown RBP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 PTGDSP41222 190 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ECI1P42126 302 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ALDH3B1P43353 468 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 RRADP55042 308 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 POLR2GP62487 172 aaKnown RBP eCLIP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ARL6IP1Q15041 203 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 SHHQ15465 462 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 PLPPR5Q32ZL2 321 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 CHRFAM7AQ494W8 412 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 KRBOX4Q5JUW0 171 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 TSPO2Q5TGU0 170 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 DOK3Q7L591 496 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 UEVLDQ8IX04 471 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 FAM24BQ8N5W8 94 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 TMEM156Q8N614 296 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 COMMD1Q8N668 190 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 SLC38A9Q8NBW4 561 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 NFAM1Q8NET5 270 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 HPSE2Q8WWQ2 592 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 DYRK2Q92630 601 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 TCEAL3Q969E4 200 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 PIGTQ969N2 578 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 REEP6Q96HR9 211 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 GNRHR2Q96P88 292 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 TAAR9Q96RI9 348 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 TCEAL7Q9BRU2 100 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ARV1Q9H2C2 271 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 SPACA1Q9HBV2 294 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 FAM212BQ9NTI7 297 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-212ENST00000552491 FRYLO94915 3013 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 ADAMTS20P59510 1910 aa4.74□□□□□ -1.65
LIMA1-212ENST00000552491 OR5H15A6NDH6 313 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 CRYM-AS1A6NIL9 109 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 SERPINE3A8MV23 424 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 ETV2O00321 342 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 EIF1BO60739 113 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 CA11O75493 328 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 CLN5O75503 358 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 TSPAN15O95858 294 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 IGHG1P01857 330 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 DBHP09172 617 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 DANCRP0C864 163 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 NQO2P16083 231 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF43P17038 809 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 GABRR1P24046 479 aa4.73□□□□□ -1.65
LIMA1-212ENST00000552491 EIF1P41567 113 aaKnown RBP4.73□□□□□ -1.65
LIMA1-212ENST00000552491 CSNK1EP49674 416 aaKnown RBP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms